Gene Information

Name : EC55989_0270 (EC55989_0270)
Accession : YP_002401396.1
Strain : Escherichia coli 55989
Genome accession: NC_011748
Putative virulence/resistance : Virulence
Product : Phage transcriptional regulator, AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 298804 - 299001 bp
Length : 198 bp
Strand : +
Note : -

DNA sequence : 
ATGTCAAATACGCTTATTCGTTTAACAGAAGTTCAGCGTAGAACTGGATATAGCAAGGCATGGATTTATCGCCTTATGGG
GCAAGGTAAATTTCCTGCATCAGTTAAAATTGGCTCGCGAGCTATTGCTTTCGTTGAGAGTGAAATTGACGAGTGGATTA
ATCAGCGTATTGCTGAATCACGCGGAACAGCTACCTGA

Protein sequence : 
MSNTLIRLTEVQRRTGYSKAWIYRLMGQGKFPASVKIGSRAIAFVESEIDEWINQRIAESRGTAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 2e-07 52
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 3e-07 52
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 3e-07 52
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 3e-08 48
unnamed CAA21398.1 - Not tested HPI Protein 4e-08 48
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 3e-09 48
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 5e-09 48
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 5e-09 48
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 2e-06 45
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 2e-06 44
ORF SG104 AAN62325.1 phage-related protein Not tested PAGI-3(SG) Protein 2e-08 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC55989_0270 YP_002401396.1 Phage transcriptional regulator, AlpA VFG1118 Protein 1e-07 52
EC55989_0270 YP_002401396.1 Phage transcriptional regulator, AlpA VFG1141 Protein 1e-09 48