Gene Information

Name : EC55989_2248 (EC55989_2248)
Accession : YP_002403284.1
Strain : Escherichia coli 55989
Genome accession: NC_011748
Putative virulence/resistance : Unknown
Product : transposase ORF 1, IS66 family
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 2293872 - 2295407 bp
Length : 1536 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : enzyme

DNA sequence :
ATGAACGACACCTCTTCTGACGACATCCTTCTGCTGAAACAGCGCCTGGCCGAACAGGAAGCGTTGATCCACGCCCTGCA
GGAAAAGCTGAGCAACCGGGAACGCGAAATAGACCATCTGCAGGCGCAACTGGATAAGCTGCGCCGGATGAACTTCGGCA
GTCGTTCCGAAAAGGTATCCCGCCGTATCGCGCAAATGGAAGCTGACCTGAACCTGCTGCAGCAGGAAAGCGATACGCTG
ACCGGCCGGGTGGATGACCCGGCAGTGCAGCGCCCGCTGCGTCAGACCCGCACCCGCAAACCGTTCCCTGAGTCACTCCC
ACGGGATGAGAAGCGGCTGCTGCCGACTGAGCCGTGTTGCCCGGAGTGCGGTGGTTCGCTGAGTTACCTGGGTGAGGATG
CCGCCGAACAGCTGGAGCTGATGCGCAGCGCCTTCCGGGTTATCCGGACAGTCCGTGAAAAGCATGCCTGCCGTCGGTGC
GATCGCATCGTTCAGGCCCCGGCTCCTTCGCGCCCCATCGAACGGGGGATCGCCGGACCGGGGCTGCTGGCCCGAGTGCT
GACCTCAAAGTATGCAGAGCACATACCGCTGTATCGCCAGTCGGAGATCTATGCCCGCCAGGGTGTAGTGTTGAGTCGTT
CTGTACTGTCGGGCTGGGTGGATGCGTGTTGTCGTCTGCTGGCACCGCTGGATGAAGCCCTTCAGCACTATGTCCTGACC
GACGGCAAACTCCATGCTGACGATATGCCTGTCCCGGTGCTGTTGCCGGGCAATAAGAAGACGAAGACCGGGCGCTTATG
GACGTACGTTCGAGACGACCGCAACGCCGGATCAGCGCTGGCCCCCGCAGTGTGGTTCGCTTACAGCCCGGACAGAAAAG
GTATCCACCCTCAGACCCATCTTGCAGGCTTCAGTGGCGTACTGCAGGCTGATGCCTACGCCGGGTTCAACGAGCTCTAC
CGCGACGGCCATATAAAGGAAGCCACGTGCTGGGCCCATGCCCGCCGAAAAATCCACGATGTTCACGTCCGTACCCCGTC
AGCCCTGACGGAGGAGGCGCTGAAACGGATCGGCGAGCTGTATGCCATCGAGTCGGAGCTCAGAGGTAAAAGAGCAGAGG
AACGGCAGGCAGTCCGGCACCAAAAAGTGCTGCCGCTGCTGGCGTCACTGGAGGGGTGGCTGCGGGAGAAACAGAAAACC
CTCTCAAGGCACTCAGAACTGGTGAAGGCGTTCGGGTATGCGCTGAACCAGTGGCCGGCGCTGACCCGCTATGCAGAAGA
TGGCTGGGTGGAGGTGGATAATAACATTGCCGAAAACGCCCTACGACTGGTCAGTCTGGGGAGAAAAAACTGGCTGTTCT
TCGGCTCGGATCATGGTGGTGAGCGCGGTGCGTCACTGTACAGTCTTATCGGGACGTGCAAATTAAACGGCGTGGATCCG
GAACGCTATCTGCATCATGTACTTGATGTCATCGCCGACTGGCCTGTGAACCGGGTGGGTGCTCTGCTCCCGTGGCGGGT
TACTCTGCCTGCCTGA

Protein sequence :
MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNLLQQESDTL
TGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCCPECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRC
DRIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHIPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT
DGKLHADDMPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTHLAGFSGVLQADAYAGFNELY
RDGHIKEATCWAHARRKIHDVHVRTPSALTEEALKRIGELYAIESELRGKRAEERQAVRHQKVLPLLASLEGWLREKQKT
LSRHSELVKAFGYALNQWPALTRYAEDGWVEVDNNIAENALRLVSLGRKNWLFFGSDHGGERGASLYSLIGTCKLNGVDP
ERYLHHVLDVIADWPVNRVGALLPWRVTLPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 88
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 88
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 88
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 88
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 88
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 88
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 88
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 88
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 88
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-155 88
unnamed AAL08460.1 unknown Not tested SRL Protein 9e-165 88
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 0.0 86
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 86
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 86
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 3e-147 64
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 2e-150 63
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 2e-150 63
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 6e-110 62
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 2e-142 60
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 3e-101 58
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 5e-132 56
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 1e-119 55
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 2e-119 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC55989_2248 YP_002403284.1 transposase ORF 1, IS66 family VFG0793 Protein 0.0 88
EC55989_2248 YP_002403284.1 transposase ORF 1, IS66 family VFG1700 Protein 1e-155 88
EC55989_2248 YP_002403284.1 transposase ORF 1, IS66 family VFG1051 Protein 5e-165 88
EC55989_2248 YP_002403284.1 transposase ORF 1, IS66 family VFG1736 Protein 5e-122 63
EC55989_2248 YP_002403284.1 transposase ORF 1, IS66 family VFG1513 Protein 4e-110 62