|
Name : flu (ECED1_5177) Accession : YP_002400911.1 Strain : Escherichia coli ED1a Genome accession: NC_011745 Putative virulence/resistance : Virulence Product : antigen 43 (Ag43) phase-variable biofilm formation autotransporter; CP4-44 prophage Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3468 EC number : - Position : 5107795 - 5110923 bp Length : 3129 bp Strand : + Note : Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 20392470, 97257509, 99212225, 2661530, 9298646; Product type h : extrachromosomal origin DNA sequence : ATGCTGATGAAACGACATCTGAATACCTGCTACAGGCTGGTATGGAATCACATTACGGGCGCTTTCGTGGTTGTCTCCGA ACTGGCCCGCACACGGGGTAAACGTGGCGGTGTGGCGGTTGCACTGTCTCTTGCCGCGGTCACGTCACTCCCGGTGCTGT CTGCTGACATCGTTGTGCACCCGGGTGAAACAGTGAATGGCGGAACACTGGTAAACCATGACAACCAGTTTGTATCCGGA ACAGCTAATGGCGTGACTGTCAGTACCGGGCTTGAGCTGGGGCCGGACAGTGACGAAAACACCGGCGGGCAATGGATAAA AGCGGGTGGCACAGGCAGAAACACCACTGTCACCGCAAATGGTCGTCAGATTGTGCAGGCAGGAGGAACTGCCAGTGATA CGGTTATTCGTGATGGCGGAGGGCAGAGCCTTAACGGACTGGCGGTGAACACCACGCTGGATAACAGAGGTGAGCAGTGG GTACACGGGGAAGGGAAAGCTACCGGTACAATTATTAACCAGGATGGTTACCAGACCATAAAACATGGCGGACTGGCAAC CGGAACCATCGTCAACACCGGTGCAGAAGGTGGTCCGGAGTCTGAAAATGTGTCCACTGGTCAGATGGTCGGGGGGACTG CTGAATCCACCACCATCAACAACAATGGCCGACAGGTTATCTGGTCTTCGGGGGTATCCCGGGACACTCTCATTTACACA GGCGGTGACCAGACGGTACACGGAGAGGCACATAATACCCGGCTGGAGGGAGGAAACCAGTATGTGCACAAATACGGACT TGCGCTGAACACGGTAATTAACGAGGGGGGCTGGCAGGTTGTTAAGGCAGGTGGTACTGCCGGTAACACCACCATAAATC AGAACGGCGAGCTGAAGGTTCATGCCGGCGGAGAAGCGTCTGATGTCACCCAGAACACGGGCGGTGCACTGGTTACCAGT ACAGCTGCAACCGTCACCGGCACAAACCGCCTGGGAGCATTCTCCGTTGTGGCGGGTAAGGCTGATAATGTCGTACTGGA AAATGGCGGACGTCTGGATGTGCTGAGCGGACACACAGCCACTAATACCCGTGTGGATGATGGCGGAACGCTGGATGTCC GCAACGGTGGTGCCGCCACCACCGTATCCATGGGGAATGGCGGTGTACTGCTGGCCGATTCCGGGGCCGCTGTCAGTGGT ACCCGGAGCGACGGAACGGCATTCCGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCAC GCTGAACGCCGGTGATACGGCCACGGATACCACGGTAAATGGCGGACTACTCACTGCCAGAGGGGGCTCGCTGGCGGGCA CCACCACGCTGAATAACGGTGCCACGCTTACCCTTTCCGGGAAAACGGTGAATAACGATACCCTGACCATCCGTGAAGGT GATGCACTCCTGCAGGGAGGCACTCTTACCGGTAACGGCAGGGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAA CACCACACTCACCCAGAAAACCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCA TTGCTCAGCGCGGTACAACCCTGAAGCTGACCGGCAGCACAGTGCTGAACGGTGCCATTGACCCCACGAATGTCACCCTG ACATCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTTCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGAT TCATTTCACCTCCGCCCGCACAGGGAAGTTCGTTCCGACAACTCTGCAGGTGAAAAACCTGAACGGGCAGAATGGCACCA TCAGCCTGCGTGTACGCCCGGATATGGCGCAGAACAATGCTGACAGACTGGTCATTGACGGTGGCAGGGCAACCGGAAAA ACCATCCTGAATCTGGTGAACGCCGGCAACAGTGGTACGGGGCTGGCGACCACCGGTAAGGGTATTCAGGTGGTTGAGGC CATTAACGGTGCCACCACGGAGGAAGGGGCTTTTGTCCAGGGGAATATGCTGCAGGCCGGGGCCTTTAACTACACCCTCA ACCGGGACAGTGATGAGAGCTGGTATCTGCGCAGTGAAGAACGTTATCGTGCTGAAGTCCCCCTGTACGCCTCCATGCTG ACACAGGCAATGGACTATGACCGGATTCTGGCAGGCTCACGCAGCCATCAGACCGGTGTAAACGGTGAAAATAACAGCGT CCGTCTCAGCATTCAGGGCGGCCATCTCGGTCACGATAACAACGGCGGTATTGCCCGTGGGGCCACGCCGGAAAGCAGCG GCAGCTATGGCTTCGTCCGTCTGGAGGGTGACCTGCTCAGAACAGAGGTCGCCGGTATGTCACTGACGACAGGAGTGTAT GGTGCTGCAGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGCGCCGGTACGGTCCGGGATGATGCCGGCAG CCTGGGTGGATACCTGAATCTGACACATACATCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCA TGAAAGCATCATCGGACAATAACGACTTCCGCGCCCGGGGCCGGGGCTGGCTGGGTTCACTGGAAACCGGTCTGCCCTTC AGTATCACTGACAACCTGATGCTGGAGCCACGACTGCAGTACACCTGGCAGGGGCTCTCCCTGGATGACGGTAAGGACAA CGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGCCTGGGCAGCCACAACGATATGA CCTTTGGTGAAGGCACCTCATCCCGTGACACCCTGCGCGACAGTGCAAAACACAGTGTGCGTGAACTGCCGGTGAACTGG TGGGTACAGCCTTCTGTTATCCGCACCTTCAGTTCCCGGGGGGACATGAGCATGGGTACAGCCGCAGCCGGCAGTAACAT GACGTTCTCACCGTCACAGAATGGTACGTCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAACATCACCC TGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACGCTGAATGTG ACCTTCTGA Protein sequence : MLMKRHLNTCYRLVWNHITGAFVVVSELARTRGKRGGVAVALSLAAVTSLPVLSADIVVHPGETVNGGTLVNHDNQFVSG TANGVTVSTGLELGPDSDENTGGQWIKAGGTGRNTTVTANGRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQW VHGEGKATGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSTGQMVGGTAESTTINNNGRQVIWSSGVSRDTLIYT GGDQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGGWQVVKAGGTAGNTTINQNGELKVHAGGEASDVTQNTGGALVTS TAATVTGTNRLGAFSVVAGKADNVVLENGGRLDVLSGHTATNTRVDDGGTLDVRNGGAATTVSMGNGGVLLADSGAAVSG TRSDGTAFRIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLLTARGGSLAGTTTLNNGATLTLSGKTVNNDTLTIREG DALLQGGTLTGNGRVEKSGSGTLTVSNTTLTQKTVNLNEGTLTLNDSTVTTDVIAQRGTTLKLTGSTVLNGAIDPTNVTL TSGATWNIPDNATVQSVVDDLSHAGQIHFTSARTGKFVPTTLQVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGK TILNLVNAGNSGTGLATTGKGIQVVEAINGATTEEGAFVQGNMLQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASML TQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSLTTGVY GAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGTRHSMKASSDNNDFRARGRGWLGSLETGLPF SITDNLMLEPRLQYTWQGLSLDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVRELPVNW WVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSINGSSAEGYNSQATLNV TF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66200.1 | hypothetical protein | Virulence | PAI III 536 | Protein | 0.0 | 97 |
| SF2991 | NP_708765.1 | outer membrane fluffing protein | Not tested | SHI-1 | Protein | 0.0 | 94 |
| sap | AAK00474.1 | Sap | Not tested | SHI-1 | Protein | 0.0 | 94 |
| aidA | ADD91708.1 | AidA | Not tested | PAI-I AL862 | Protein | 0.0 | 87 |
| flu | CAI43838.1 | antigen 43 | Not tested | LEE | Protein | 0.0 | 87 |
| unnamed | AAL08472.1 | putative autotransporter | Not tested | SRL | Protein | 0.0 | 59 |
| Z1211 | NP_286746.1 | adhesin | Not tested | TAI | Protein | 0.0 | 59 |
| Z1651 | NP_287154.1 | adhesin | Not tested | TAI | Protein | 0.0 | 59 |
| unnamed | CAE85197.1 | antigen43 protein orthologue | Not tested | PAI V 536 | Protein | 0.0 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| flu | YP_002400911.1 | antigen 43 (Ag43) phase-variable biofilm formation autotransporter; CP4-44 prophage | VFG1675 | Protein | 0.0 | 97 |
| flu | YP_002400911.1 | antigen 43 (Ag43) phase-variable biofilm formation autotransporter; CP4-44 prophage | VFG0655 | Protein | 0.0 | 94 |
| flu | YP_002400911.1 | antigen 43 (Ag43) phase-variable biofilm formation autotransporter; CP4-44 prophage | VFG1063 | Protein | 0.0 | 59 |
