Gene Information

Name : ECED1_5010 (ECED1_5010)
Accession : YP_002400762.1
Strain : Escherichia coli ED1a
Genome accession: NC_011745
Putative virulence/resistance : Unknown
Product : putative transposase ORF 1, IS66 family
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 4954358 - 4955896 bp
Length : 1539 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : putative enzyme

DNA sequence :
ATGAGCAGCTCACTTCCTGACGATATCAATGCACTGAAACGTCTCCTTGCCGAACAGGAGGCGCTGAACCGTGCCCTGCT
GGAAAAGCTGAACGAGCGTGAACGCGAAATAGACCATCTGCAGGCACAGCTGGATAAGCTGCGCCGGATGAACGTCGGCA
GCTGCTCCGAAAAAGTCTCCCGTCGTATCGCACAGATGGAAGCTGACCTGAAGGCACTTCAGAAAGAAAGTGATACCCTT
ACCGGTCGGGTTGACGACCCGGCCGTGCAGCGCCCGCTGCGTCAAACCCGCACCCGCAAACCGTTCCCCGAATCACACCC
CCGCGATGAAAAACGGCTGCTGCCGGCAGCGTTATGCTGCCCGGAATGTGGAGGCTCACTGAGCTATCTGGGTGAGGATG
CCGCCGAACAGCTGGAGTTGATGCGCAGCGCCTTCCGGGTTATCCGGACTGTACGTGAAAAGCATGCCTGTACTCAGTGC
GATGCCATCGTGCAGGCCCCCGCGCCTTCACGGCCCATCGAGCGGGGTATCGCAGGATCGGGGCTGCTGGCCCGCGTGCT
GATCTCAAAGTATGCAGAGCACACCCCGCTGTACCGCCAGTCTGAAATGTACGGCCGCCAGGGCGTGGAGCTGAGTCGTT
CACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCTACTGTCACCGCTGGAAGAAGCGCTTCAGGACTATGTGCTGACT
GACGGTAAGCTCCATGCTGATGACACGCCTGTCCCGGTGCTGTTGCCAGGCAATAAGAAAACGAAGACCGGGCGGTTATG
GACCTACGTTCGTGACGACCGTAACGCCGGGTCAACGCTGGCGCCGGCGGTGTGGTTCGCTTACAGCCCGGACAGAAAAG
GCATCCATCCGCAGACCCATCTTGCGGGGTTCAGTGGTGTACTGCAGGCGGATGCATACGCCGGGTTCAACGAGCTGTAC
CGGGATGGCCGGATAACGGAAGCCGCCTGTTGGGCTCACGCCCGCCGTAAAATCCACGATGTGCACGTTCGCACCCCGTC
AGCCCTGACGGAGGAAGCGCTGAAACGGATCGGCGAACTGTACGCCATCGAGGCAGAGATAAGGGGAATGACGGCGGAGC
TGCGCCTTGCCGAACGTCAGTTGAAAACGAAACCGCTGCTGAAATCCCTGGAAAGCTGGCTGCGTGAAAAGATGAAAACC
CTGTCGCGACACTCAGAACTGGCGAAAGCGTTCGCATACGCCCTGAACCAGTGGCCGGCGCTGACGTACTATGCAGATGA
TGGCTGGGCTGAGGCGGACAATAACATCGCTGAAAATGCGTTGCGGATGGTCAGTCTGGGCCGCAAAAACTACCTGTTCT
TCGGTTCGGATCATGGAGGAGAGCGGGGAGCGCTGCTGTACAGCCTGATCGGGACGTGCAAACTGAACGGAGTGGAGCCA
GAAAGCTACCTCCGCTATGTCCTTGACGTCATAGCCGACTGGCCGATAAACCGGGTCGGCGAACTGCTCCCCTGGCGCGT
AGCACTGCCGACTGAATAA

Protein sequence :
MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNVGSCSEKVSRRIAQMEADLKALQKESDTL
TGRVDDPAVQRPLRQTRTRKPFPESHPRDEKRLLPAALCCPECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACTQC
DAIVQAPAPSRPIERGIAGSGLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT
DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTHLAGFSGVLQADAYAGFNELY
RDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGELYAIEAEIRGMTAELRLAERQLKTKPLLKSLESWLREKMKT
LSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALRMVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEP
ESYLRYVLDVIADWPINRVGELLPWRVALPTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 4e-172 99
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 0.0 91
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 90
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 90
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 89
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 89
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 89
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 89
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 89
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 89
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 89
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 89
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 89
unnamed AAL08460.1 unknown Not tested SRL Protein 7e-163 73
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 1e-148 65
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 1e-152 65
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 1e-152 65
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 5e-106 63
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 2e-141 59
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 5e-133 57
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 6e-98 57
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 2e-118 55
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 2e-118 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECED1_5010 YP_002400762.1 putative transposase ORF 1, IS66 family VFG1700 Protein 2e-172 99
ECED1_5010 YP_002400762.1 putative transposase ORF 1, IS66 family VFG0793 Protein 0.0 89
ECED1_5010 YP_002400762.1 putative transposase ORF 1, IS66 family VFG1051 Protein 4e-163 73
ECED1_5010 YP_002400762.1 putative transposase ORF 1, IS66 family VFG1513 Protein 3e-106 63
ECED1_5010 YP_002400762.1 putative transposase ORF 1, IS66 family VFG1736 Protein 6e-121 63