|
Name : gspD (ECED1_3990) Accession : YP_002399822.1 Strain : Escherichia coli ED1a Genome accession: NC_011745 Putative virulence/resistance : Virulence Product : general secretory pathway component, cryptic Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 3897764 - 3899716 bp Length : 1953 bp Strand : + Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 96256608; Product type t : transporter DNA sequence : ATGAAGGGACTCAATAAAATCACCTGCTGCTTGCTGGCAGCACTACTTATGCCTTGTGCAGGGCACGCTGAGAACGAACA ATACGGCGCTAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAAACGATCCTGA TCGACCCTTCGGTACAGGGAACCATTTCCGTACGCAGTAATGATACGTTTAGCCAACAGGAGTACTACCAGTTCTTTTTA AGTATTCTTGATCTTTACGGTTATTCCGTGATCACGCTGGACAATGGTTTTCTGAAAGTGGTGCGCTCAGCTAATGTAAA AACATCGCCAGGGATGATTGCTGACAGTTCTCGTCCAGGCGTAGGTGATGAGTTGGTCACCCGAATCGTACCGCTTGAGA ACGTTCCTGCTCGTGACCTGGCTCCCCTGCTCCGCCAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAA CCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAATAAACTGATTGAAGTCATAAAGCGCGTTGATGTCAT CGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCATCAGCGGAAGATCTCGCCGAGATTCTTAATCAATTAATCA GCGAAAGCCACGGTAAAAGCCAGATGCCTGCCCTCCTTTCCGCGAAGATTGTGGCGGATAAGCGAACCAACTCTCTTATC ATCAGCGGGCCGGAAAAAGCACGCCAGCGCATAACTTCATTACTGAAAAGCCTTGATGTAGAAGAGAGCGAGGAAGGAAA TACCCGGGTCTATTACCTGAAATATGCTAAAGCCACGAATCTGGTGGAAGTGCTAACCGGTGTTTCCGAAAAGCTGAAAG ATGAAAAAGGGAATTCGCGTAAGCCTTCTTCTACTTCTGCGATGGATAATGTGGCCATTACCGCCGATGAACAGACCAAC TCGTTGGTCATTACCGCTGACCAGTCCGTCCAGGAGAAACTCGCCACGGTAATTGCGCGTCTGGATATTCGCCGTGCACA GGTGCTGGTTGAGGCAATCATCGTCGAAGTTCAGGATGGAAATGGACTCAACCTCGGCGTGCAATGGGCGAATAAAAACG TTGGCGCACAGCAATTTACCAATACGGGATTACCGGTTTTTAACGCTGCGCAAGGTGTAGCTGATTATAAAAAGAATGGC GGGATCACCAGCGCGAATCCTGCCTGGGATATGTTTAGCGCCTACAATGGCATGGCTGCAGGCTTCTTCAATGGCGACTG GGGCGTATTGTTGACTGCGCTGGCCAGTAACAATAAAAATGACATCCTCGCCACCCCGAGCATCGTAACGCTGGATAATA AACTCGCGTCCTTCAACGTTGGTCAGGATGTGCCGGTGCTATCCGGCTCTCAGACCACTTCTGGGGATAACGTCTTTAAT ACTGTCGAACGCAAAACGGTGGGCACAAAACTCAAAGTCACTCCGCAGGTCAATGAAGGCGACGCGGTACTGCTCGAAAT AGAGCAGGAGGTTTCCAGCGTTGACTCTTCGTCTAATTCGACGCTCGGCCCGACATTTAACACCCGTACTATTCAAAACG CCGTGCTGGTTAAAACCGGTGAAACGGTGGTCCTGGGCGGATTGCTGGATGATTTTTCTAAAGAGCAAGTGTCAAAGGTT CCTCTGCTTGGCGATATTCCTTTAGTGGGACAACTCTTCCGCTATACCTCGACCGAGCGCGCTAAACGCAACCTGATGGT ATTTATCCGCCCGACGATTATCCGTGACGATGATGTTTATCGCTCACTGTCAAAAGAGAAATACACCCGCTACCGTCAGG AGCAACAGCTGCGAATCGACGGGAAATCAAAAGCGCTGGTTGGCTCGGAAGATTTGCCGGTGCTGAATGAGAACACGTTC AACAGTCACGCCCCTGCGCCATCGTCACGGTGA Protein sequence : MKGLNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQGTISVRSNDTFSQQEYYQFFL SILDLYGYSVITLDNGFLKVVRSANVKTSPGMIADSSRPGVGDELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYE PSNVLILTGRASTINKLIEVIKRVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSAKIVADKRTNSLI ISGPEKARQRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNSRKPSSTSAMDNVAITADEQTN SLVITADQSVQEKLATVIARLDIRRAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNG GITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKV PLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQLRIDGKSKALVGSEDLPVLNENTF NSHAPAPSSR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-124 | 45 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 3e-131 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | YP_002399822.1 | general secretory pathway component, cryptic | VFG2047 | Protein | 1e-121 | 45 |
