Gene Information

Name : rci (ECED1_3517)
Accession : YP_002399379.1
Strain : Escherichia coli ED1a
Genome accession: NC_011745
Putative virulence/resistance : Unknown
Product : Shufflon-specific DNA recombinase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4973
EC number : -
Position : 3443889 - 3445013 bp
Length : 1125 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 3065610; Product type e : enzyme

DNA sequence : 
ATGTTTCGAAAAATAAAAATTCGCAAAATGACTCTCAACCGGGCGCTGGACAAATACCTGAAGACAGTATCCATCCACAA
AAAAGGTCATCTGCAGGAGTTTTATCGCGTCAATGTGATTAAACGTCACCCTATGGCCGAGCGCTATATGGATGAAATCA
CCACCGTTGATATCGCCACTTACCGGGATCAGCGTTTGGCTCAAATTAACCCACGAACAGGGCGTCAAATCACCGGAAAC
ACCGTCCGTCTTGAACTTGCTCTTTTATCATCATTATTCAATATCGCCAGTGTGGAATGGGGGACATGCCGTATGAATCC
TGTTGAACTGGTCCGAAAACCCAAAATCAGTAGTGGACGCGATCGTCGCCTGACTTCTGGCGAAGAACGCCGACTCTCCC
GCTATTTCAGAGATAAAAATCAGCAGCTCTACGTTATCTTCCATCTGGCCCTAGAAACAGCAATGCGACAGGGGGAAATC
CTCACATTACGCTGGGAACACCTCGATTTGCAGCACGGAGTGGCGCATCTTCCTGAAACGAAAAATGGTTTACCACGCGA
TGTCCCACTCTCCCGGAAAGCTCGCAACTACCTGCAAATTCTGCCACAACAGATAAACGGCAATGTGTTCAGTTACACCT
CATCCGGTTTCAAAAGCGCCTGGCGTACCGCACTTCTGGACCTGAAAATAGAAAATCTGCATTTTCACGACCTTCGCCAT
GAAGCCATCAGCCGTTTTTTTGAACTCGGCACACTCAACGTCATGGAGGTTGCGGCCATTTCCGGCCATCGCTCTCTCAA
CATGCTGAAGCGATATACTCATCTGCGGGCGTATCAGCTGGTCAGCAAGCTCGATACAAAGCGTAAACAGACCTGCAAAA
TCGCCCCCTATTTTGTTCCCTATCCCGCAACAGTCGGGAACAGAAACGGACTGTTCATTGTGACACTGCACGATTTCGAC
CTTGAAACCCGTGCTGAAACCCGGGAACTGGCAATATCTCATGCCAGCGTATTGTTGCTGCGCACACTGGCACAGGCGGC
TCAGCGGGGTGAACGCGTTCCAACGCCAGGCGAGCTACCCGCAAACATTGATGCACGGGTCATGATTTGTCCGTTAACAA
GCTGA

Protein sequence : 
MFRKIKIRKMTLNRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPMAERYMDEITTVDIATYRDQRLAQINPRTGRQITGN
TVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSGRDRRLTSGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEI
LTLRWEHLDLQHGVAHLPETKNGLPRDVPLSRKARNYLQILPQQINGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH
EAISRFFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDTKRKQTCKIAPYFVPYPATVGNRNGLFIVTLHDFD
LETRAETRELAISHASVLLLRTLAQAAQRGERVPTPGELPANIDARVMICPLTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rci NP_458640.1 shufflon-specific DNA recombinase Not tested SPI-7 Protein 6e-124 74
rci NP_807850.1 shufflon-specific DNA recombinase Not tested SPI-7 Protein 6e-124 74
rci AAC38070.2 Rci Not tested SPI-7 Protein 5e-124 74