Gene Information

Name : ECED1_3510 (ECED1_3510)
Accession : YP_002399373.1
Strain : Escherichia coli ED1a
Genome accession: NC_011745
Putative virulence/resistance : Virulence
Product : Peptidoglycan-binding-like protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 3440495 - 3440971 bp
Length : 477 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm : putative membrane component

DNA sequence : 
ATGAAATGGTTATATTTCTCTGTCCTGATTTTATTCAGTCATACATCAATCGCATCTGTGATGAATAATAATCATCTCGA
TTCCTGTTTTATTCAGGCCGGAAAACGTTACCTGATTGCCCCTGAGCTTCTGAAAACCATTGCACAGCAGGAAAGCGGCC
TGGTCGCCACTGCGATAAATCACAATAAAAACAAATCCGGAAAAATCATCAGTACGGATTACGGAATAATGCAGATTAAT
TCATCGCATATTCCTGAACTGAAAAAACTGGGCGTCATTAAAGACAAGGATGAACTGCTTAAAAATCCCTGCCTGAATAT
TCATACCGGCGCCTGGATACTGGCCCGCCATTTTCAACGCTGCGGCGTTAACTGGGAATGCCTTGGCAGTTACAACGCAG
GATTCAGCAAAAATAACACAGCCCGGCGCATGATATATGCCCGAATAATCCACAACCGGTATTTCAGAAAAGATTAA

Protein sequence : 
MKWLYFSVLILFSHTSIASVMNNNHLDSCFIQAGKRYLIAPELLKTIAQQESGLVATAINHNKNKSGKIISTDYGIMQIN
SSHIPELKKLGVIKDKDELLKNPCLNIHTGAWILARHFQRCGVNWECLGSYNAGFSKNNTARRMIYARIIHNRYFRKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs3711 NP_311738.1 hypothetical protein Not tested LIM Protein 3e-27 53
pilT NP_458636.1 putative membrane protein Virulence SPI-7 Protein 4e-31 48
pilT NP_807847.1 hypothetical protein Virulence SPI-7 Protein 4e-31 48
pilT AAC98888.1 PilT Virulence SPI-7 Protein 3e-31 48
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 1e-16 43
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 7e-17 43
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 7e-17 43
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 1e-16 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECED1_3510 YP_002399373.1 Peptidoglycan-binding-like protein VFG0539 Protein 3e-17 43
ECED1_3510 YP_002399373.1 Peptidoglycan-binding-like protein VFG0994 Protein 3e-16 41