Gene Information

Name : ECED1_3320 (ECED1_3320)
Accession : YP_002399199.1
Strain : Escherichia coli ED1a
Genome accession: NC_011745
Putative virulence/resistance : Virulence
Product : putative regulatory protein from prophage (AlpA family)
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 3262451 - 3262654 bp
Length : 204 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type h : extrachromosomal origin

DNA sequence :
ATGGCTAATAACAATTCATTCATCCGTCTTTCTGAGGTTATGCGCCGTACTGGTTACGGTCGCGCATGGATTTATCGCCT
GATCAGCCTGGGGCGCTTCCCTAAACCGGTAAAAATTGGTCCCCGCTCCGTGGCTTTTATTGAAAGTGAAGTCGACGAAT
GGATTAACCAGCGTATTGATGCTTCTCGCAACAACGCCGCGTAA

Protein sequence :
MANNNSFIRLSEVMRRTGYGRAWIYRLISLGRFPKPVKIGPRSVAFIESEVDEWINQRIDASRNNAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 5e-07 48
unnamed CAA21398.1 - Not tested HPI Protein 8e-07 48
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 8e-08 48
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 1e-07 48
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 1e-07 48
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 2e-08 46
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 2e-08 46
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 1e-08 46
Z1188 NP_286723.1 hypothetical protein Not tested TAI Protein 2e-04 43
Z1627 NP_287131.1 hypothetical protein Not tested TAI Protein 2e-04 43
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 1e-05 42
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 2e-07 42
c5192 NP_757040.1 hypothetical protein Not tested PAI II CFT073 Protein 9e-08 42
unnamed CAD33739.1 hypothetical protein Not tested PAI I 536 Protein 7e-08 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECED1_3320 YP_002399199.1 putative regulatory protein from prophage (AlpA family) VFG1118 Protein 3e-08 48
ECED1_3320 YP_002399199.1 putative regulatory protein from prophage (AlpA family) VFG1141 Protein 5e-09 46
ECED1_3320 YP_002399199.1 putative regulatory protein from prophage (AlpA family) VFG1480 Protein 3e-08 42