Gene Information

Name : yfcS (ECED1_2800)
Accession : YP_002398708.1
Strain : Escherichia coli ED1a
Genome accession: NC_011745
Putative virulence/resistance : Virulence
Product : putative periplasmic pilus exported chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 2738190 - 2738942 bp
Length : 753 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf : putative factor

DNA sequence : 
ATGTCTTATAAATTATCCTGTCCAATGCTCGTCAGCACAGCGCTGATGGCACAGCTTACCACCGCCAGCCTGACGGCGCA
TGCATCGGTCACCCCGGATCGCACCCGTCTGGTGTTTAACGAAAGCGATAAATCGATCAGCGTGACGTTGCGTAACAACA
ACGAAAAGCTGCCTTACCTGGCGCAAAGCTGGCTGGAAGACGAGAAGGGCAACAAAATCACTTCGCCGCTGGCGGTGCTG
CCGCCGGTGCAGCGTATTGACGCTATGATGAACGGCCAGGTGAAGATTCAGGCGCTGCCGGACATTCACACGCTGCCGTC
CGACCGAGAAAGCCTGTTCTACTACAACGTGCGTGAGATCCCGCCAAAGTCCGGGAAAGCCAACACCCTGCAAATTGCGC
TGCAAACGCGCATCAAGCTGTTCTGGCGACCAAAGGCGCTGGAAAAGATTGACATGAGAAAACCGTGGCAGTTTAAGGTC
ACACTCACGCGCAGCGGCCAGGACTATACCGTCAATAACCCGACGCCGTACCACGTCATCATCAGCGATGCCAGCACACA
GAAGAAAGGGCTGACTGCCGCCGGGTTTAAACCGCTGGTGATGCCACCGAAAACGTCACAACCGTTAAAGGCAAAAATGG
CGAGCGCCCCGGTGCTGACCTATATCAACGACTACGGCGCGCGCATGCCGCTGATCTTCCGTTGTGAAGGGAACACCTGC
AAGGTGGATGAAGATCAAAGCAGCAAAGGTTGA

Protein sequence : 
MSYKLSCPMLVSTALMAQLTTASLTAHASVTPDRTRLVFNESDKSISVTLRNNNEKLPYLAQSWLEDEKGNKITSPLAVL
PPVQRIDAMMNGQVKIQALPDIHTLPSDRESLFYYNVREIPPKSGKANTLQIALQTRIKLFWRPKALEKIDMRKPWQFKV
TLTRSGQDYTVNNPTPYHVIISDASTQKKGLTAAGFKPLVMPPKTSQPLKAKMASAPVLTYINDYGARMPLIFRCEGNTC
KVDEDQSSKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 4e-49 46
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 1e-42 44
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 6e-49 44
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 2e-48 44
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 2e-48 44
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 3e-48 43
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 3e-48 43
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 2e-48 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfcS YP_002398708.1 putative periplasmic pilus exported chaperone VFG0885 Protein 4e-43 44
yfcS YP_002398708.1 putative periplasmic pilus exported chaperone VFG1547 Protein 4e-49 44
yfcS YP_002398708.1 putative periplasmic pilus exported chaperone VFG0896 Protein 1e-48 43