Gene Information

Name : tetC (pEFER_0039)
Accession : YP_002394586.1
Strain :
Genome accession: NC_011743
Putative virulence/resistance : Resistance
Product : transcriptional regulator TetC
Function : -
COG functional category : K : Transcription
COG ID : COG1309
EC number : -
Position : 40293 - 40961 bp
Length : 669 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 10781570, 6094472, 6094471; Product type pr : putative regulator

DNA sequence : 
ATGTTCTTAAGATTGTCACGACCACATCATCATGATACCATAAACATACTGACGGTATGTTATTTTAAATCTATCATGGA
AAATAAAAATCATCAACAAGAAAATTTTAAGAGTACCTATCAATCACTGGTTAACTCAGCACGAATATTGTTTGTTGAAA
AAGGCTATCAAGCTGTTTCAATAGATGAGATCTCGGGAAAAGCGTTGGTGACCAAAGGTGCCTTTTATCATCACTTTAAA
AATAAAAAACAATTACTCAGTGCCTGTTATAAGCAGCAATTAATTATGATTGATGCCTACATCACAACAAAAACTGATTT
AACAAATGGTTGGTCTGCCTTAGAAAGTATATTTGAACATTATCTTGATTATATTATTGATAATAATAAAAACCTTATCC
CTATCCAAGAAGTGATGCCTATCATTGGTTGGAATGAACTTGAAAAAATTAGCCTTGAATACATTACTGGTAAGGTAAAC
GCCATTGTCAGCAAATTGATCCAAGAGAACCAACTTAAAGCTTATGATGATGATGTGCTTAAAAACTTACTCAATGGCTG
GTTTATGCATATCGCAATACATGCGAAAAACCTAAAAGAGCTTGCCGATAAAAAAGGCCAATTTATTGCTATTTACCGCG
GCTTTTTATTGAGCTTGAAAGATAAATAA

Protein sequence : 
MFLRLSRPHHHDTINILTVCYFKSIMENKNHQQENFKSTYQSLVNSARILFVEKGYQAVSIDEISGKALVTKGAFYHHFK
NKKQLLSACYKQQLIMIDAYITTKTDLTNGWSALESIFEHYLDYIIDNNKNLIPIQEVMPIIGWNELEKISLEYITGKVN
AIVSKLIQENQLKAYDDDVLKNLLNGWFMHIAIHAKNLKELADKKGQFIAIYRGFLLSLKDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetC AAL08446.1 putative transcriptional regulator TetC Not tested SRL Protein 3e-87 100
tetC AEA34666.1 tetracycline resistance protein C Not tested Not named Protein 3e-87 100

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetC YP_002394586.1 transcriptional regulator TetC NC_010558.1.6275977. Protein 4e-101 100

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetC YP_002394586.1 transcriptional regulator TetC VFG1037 Protein 2e-87 100