Gene Information

Name : fimC (ECS88_4934)
Accession : YP_002394405.1
Strain : Escherichia coli S88
Genome accession: NC_011742
Putative virulence/resistance : Virulence
Product : chaperone, periplasmic
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 4887127 - 4887852 bp
Length : 726 bp
Strand : +
Note : Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 20450729, 90220509, 93155127, 93391362, 1363735, 8104335, 8636962, 9783748; Product type f : factor

DNA sequence : 
GTGAGTAATAAAAACGTCAATGTAAGGAAATCGCAGGAAATAACATTCTGCTTGCTGGCAGGTATCCTGATGTTCATGGC
AATGATGGTTGCCGGACGCGCCGAAGCGGGAGTGGCCTTAGGTGCGACTCGCGTAATTTATCCGGCAGGGCAAAAACAAG
TGCAACTTGCCGTGACAAATAATGATGAAAATAGCACCTATTTAATTCAATCATGGGTGGAAAATGCCGATGGTGTAAAG
GATGGTCGTTTTATCGTGACGCCACCTCTGTTTGCGATGAAGGGAAAAAAAGAGAATACCTTACGTATTCTTGATGCAAC
AAATAACCAATTGCCACAGGATCGGGAAAGTTTATTCTGGATGAACGTTAAAGCGATTCCGTCAATGGATAAATCAAAAT
TGACTGAGAATACGCTACAGCTCGTAATTATCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCC
GATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACTCTGATTAACCCGACACCCTATTACCTGAC
GGTAACAGAGTTGAATGCCGGAACCCGGATTCTTGAAAATGCATTGGTGCCTCCAATGGGCGAAAGCACGGTTAAATTGC
CTTCTGATGCAGGAAGCAATATTACTTACCGAACAATAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATG
GAATAA

Protein sequence : 
MSNKNVNVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATRVIYPAGQKQVQLAVTNNDENSTYLIQSWVENADGVK
DGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQLVIISRIKLYYRPAKLALPP
DQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRILENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVM
E

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 6e-84 84
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 3e-70 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimC YP_002394405.1 chaperone, periplasmic VFG0875 Protein 8e-110 99
fimC YP_002394405.1 chaperone, periplasmic VFG0911 Protein 1e-70 66
fimC YP_002394405.1 chaperone, periplasmic VFG1644 Protein 2e-70 66
fimC YP_002394405.1 chaperone, periplasmic VFG0445 Protein 6e-53 48