Gene Information

Name : ECS88_4880 (ECS88_4880)
Accession : YP_002394355.1
Strain : Escherichia coli S88
Genome accession: NC_011742
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4841062 - 4841469 bp
Length : 408 bp
Strand : -
Note : Evidence 4 : Homologs of previously reported genes of unknown function

DNA sequence : 
ATGACTATGTACGCAAAATCCTTTATCGCTCTTGATGGCAACGGACGTCTGACGGGCGCCCGTACTGCACAGGCCGCACC
TTATGCTAACTACACCTGCCACTTGTGTGGCAGTGCACTCAGATACCATCCGCAATACGAAACTGAACTTCCCTGGTTTG
AACACACTGACGACAGGCTGACAGAGCACGGTCAACAGTGCCCTTATGTCAGGCCGGAGCGCAGAGAAATACAGTTGATT
AAACGTCTGCAGCAATTCGTACCGGATGCCTTACCCGTGGTGCGTAAAGCCAGCTGGCACTGCAGACAATGTCACCACGA
TTATTATGGGGAGCAGTACTGCACACACTGCCAGACCGGAGGATTCAGTATTCCCCGGACAACTCAGGAGGAAATATGCG
AATTCTGA

Protein sequence : 
MTMYAKSFIALDGNGRLTGARTAQAAPYANYTCHLCGSALRYHPQYETELPWFEHTDDRLTEHGQQCPYVRPERREIQLI
KRLQQFVPDALPVVRKASWHCRQCHHDYYGEQYCTHCQTGGFSIPRTTQEEICEF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1083 YP_853103.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 1e-60 99
ECO103_3572 YP_003223433.1 hypothetical protein Not tested LEE Protein 1e-51 93
unnamed CAI43833.1 hypothetical protein Not tested LEE Protein 2e-57 92
unnamed ADD91715.1 hypothetical protein Not tested PAI-I AL862 Protein 3e-56 91
S3186 NP_838469.1 hypothetical protein Not tested SHI-1 Protein 2e-50 89
SF2981 NP_708755.1 hypothetical protein Not tested SHI-1 Protein 2e-50 89
unnamed CAE85181.1 hypothetical protein Not tested PAI V 536 Protein 1e-47 89
unnamed AAK00467.1 unknown Not tested SHI-1 Protein 1e-50 89
aec60 AAW51743.1 Aec60 Not tested AGI-3 Protein 5e-51 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECS88_4880 YP_002394355.1 hypothetical protein VFG0645 Protein 5e-51 89