Gene Information

Name : ECS88_4649 (ECS88_4649)
Accession : YP_002394146.1
Strain : Escherichia coli S88
Genome accession: NC_011742
Putative virulence/resistance : Virulence
Product : HTH-type transcriptional regulator yfjR
Function : -
COG functional category : K : Transcription
COG ID : COG2378
EC number : -
Position : 4627206 - 4627886 bp
Length : 681 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : regulator

DNA sequence : 
ATGTCTGATGATCGTTCCCGGCATGATCGTCTGGCGGTTCGCTTATCACTCATTATCAGCCGACTGATGGCCGGAGAATC
TCTGTCACTAAAGACACTGTCAGATGAATTTGGCGTTACAGAACGTACTTTACAGCGCGATTTTCATCAGCGTCTGGTTC
ACCTGGATTTAGAGTACAGAAATGGCAGGTACAGCCTCAGACGACAGAGCAGCCCGTGTGCGATCCCTGAAATGCTTTCT
TTTATACAGAATACCGGGATCGCACGGATACTTCCGCTCCGGAACGGACGACTGATAACCTGTCTTACCGACAACCAGGA
GCCCTCTCCCTGCCTTATCTGGCTACCGGCGCCGGATATCACTGCAACGTTCCCCGAGTGTTTCTCGCAACTCATCCTGG
CAATAAAACAGTGTATCCACATCTCGCTGATGACTGAGCGATGGTATACGTCACTGGAGCCCTGCCGGCTCATTTATTAC
AGCGGAAGCTGGTATCTGATCGCGTTACAGAAGGGAAAACTGCAGGTCTTTCCCCTGGCAGATATCAAATCAGTCAGCCT
GACATCAGAACGGTTTGAACGGAGAGGCCACATCCACAATCTGGTCGCTGAAGAGCGTTTTATCTCCGCCCTGCCACATT
TCTCTTTCATCCATAAACTTATCAACACCTTTAACCTGTGA

Protein sequence : 
MSDDRSRHDRLAVRLSLIISRLMAGESLSLKTLSDEFGVTERTLQRDFHQRLVHLDLEYRNGRYSLRRQSSPCAIPEMLS
FIQNTGIARILPLRNGRLITCLTDNQEPSPCLIWLPAPDITATFPECFSQLILAIKQCIHISLMTERWYTSLEPCRLIYY
SGSWYLIALQKGKLQVFPLADIKSVSLTSERFERRGHIHNLVAEERFISALPHFSFIHKLINTFNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_3492 YP_854319.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 3e-102 98
unnamed CAD33782.1 hypothetical protein Not tested PAI I 536 Protein 7e-102 98
yfjR AAZ04453.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 2e-102 98
unnamed CAD42094.1 hypothetical protein Not tested PAI II 536 Protein 2e-102 98
c5160 NP_757008.1 transcriptional regulator YfjR Not tested PAI II CFT073 Protein 1e-101 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECS88_4649 YP_002394146.1 HTH-type transcriptional regulator yfjR VFG1523 Protein 4e-102 98
ECS88_4649 YP_002394146.1 HTH-type transcriptional regulator yfjR VFG1613 Protein 1e-102 98