Gene Information

Name : ECS88_4645 (ECS88_4645)
Accession : YP_002394142.1
Strain : Escherichia coli S88
Genome accession: NC_011742
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4624486 - 4625037 bp
Length : 552 bp
Strand : -
Note : Evidence 4 : Homologs of previously reported genes of unknown function

DNA sequence :
GTGATGAACGTGATGTTGTCAGCCCCCGGCCTTTATTTCCTCTCATTTATACACATTGTAAGGATTTCACTCATGAAAAT
CGTTTCTCAGAACACAACTGCTCTTTCTTCAGCCACAGCACCAGGGAATAACCAGCCCCAACTGGTTGCTACTCCCGTCC
CTGATGAACAACGTATCAGCTTCTGGCCGCAGCATTTTGGCCTCATTCCACAGTGGGTGACCCTGGAGCCCCGTGTCTTC
GGCTGGATGGACCGTCTGTGCGAAGACTACTGCGGGGGCATCTGGAATCTGTACACCCTGAACAACGGTGGCGCATTTAT
GGCACCTGAACCGGATGACGATGATGACGAAACATGGGTACTGTTCAATGCCATGAACGGTAACCGCGCTGAAATGAGTC
CGGAAGCTGCCGGTATTGCCGCCTGTCTGATGACGTACAGCCATCATGCCTGTCGTACGGAATGTTATGCCATGACGGTC
CATTATTACCGGCTGCGGGATTACGCCCTGCAGCATCCGGAATGCAGCGCCATTATGCGCATCATTGACTGA

Protein sequence :
MMNVMLSAPGLYFLSFIHIVRISLMKIVSQNTTALSSATAPGNNQPQLVATPVPDEQRISFWPQHFGLIPQWVTLEPRVF
GWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGNRAEMSPEAAGIAACLMTYSHHACRTECYAMTV
HYYRLRDYALQHPECSAIMRIID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S3200 NP_838483.1 hypothetical protein Not tested SHI-1 Protein 1e-60 94
SF2995 NP_708769.2 hypothetical protein Not tested SHI-1 Protein 1e-60 94
unnamed AAL67346.1 intergenic-region protein Not tested PAI II CFT073 Protein 1e-60 93
Z1216 NP_286751.1 hypothetical protein Not tested TAI Protein 6e-63 93
Z1656 NP_287159.1 hypothetical protein Not tested TAI Protein 6e-63 93
unnamed CAD66202.1 hypothetical protein Not tested PAI III 536 Protein 4e-67 93
ECO103_3588 YP_003223445.1 hypothetical protein Not tested LEE Protein 3e-61 93
c5155 NP_757003.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-61 92
ORF_48 AAZ04457.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 7e-62 92
yfjX YP_854322.1 hypothetical protein Not tested PAI I APEC-O1 Protein 1e-61 92
z1216 CAD33786.1 Z1216 protein Not tested PAI I 536 Protein 4e-67 92
unnamed CAI43899.1 hypothetical protein Not tested LEE Protein 1e-68 91
yfjX CAE85200.1 YfjX protein Not tested PAI V 536 Protein 8e-61 91
unnamed CAD42097.1 hypothetical protein Not tested PAI II 536 Protein 1e-65 90
yfjX ADD91703.1 YfjX Not tested PAI-I AL862 Protein 4e-66 89
unnamed CAI43844.1 hypothetical protein Not tested LEE Protein 4e-67 89
aec72 AAW51755.1 Aec72 Not tested AGI-3 Protein 3e-65 89

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECS88_4645 YP_002394142.1 hypothetical protein VFG0659 Protein 4e-61 94
ECS88_4645 YP_002394142.1 hypothetical protein VFG1677 Protein 1e-67 93
ECS88_4645 YP_002394142.1 hypothetical protein VFG1527 Protein 2e-67 92
ECS88_4645 YP_002394142.1 hypothetical protein VFG1616 Protein 6e-66 90