Gene Information

Name : yghF (ECS88_3345)
Accession : YP_002392952.1
Strain : Escherichia coli S88
Genome accession: NC_011742
Putative virulence/resistance : Virulence
Product : type II secretion protein GspC
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3031
EC number : -
Position : 3303443 - 3304273 bp
Length : 831 bp
Strand : -
Note : part of the general (type II) secretion pathway (GSP), a signal sequence-dependent process responsible for protein export; involved in trans-location of exoproteins from the cytoplasm to the periplasm

DNA sequence : 
ATGTTCTGGCTCATGCTGCTTATTATTTCTGCAAAAATGGCGTATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATA
TACGGCGGTTTCCTCATCGGTGAATAAACCGCTCCGTGCGGATGCAAAACCGTTCGATAAAAATGACGTGCAATTAGTCA
GCCAACAAAACTGGTTTGGCAAATATCAACCCGTCGCCGCACCGGTAAAACAACCTGAATCTGCGCCTGTGGCAGAAACG
CGTCTTAATGTGGTGCTGCGTGGGATCGCCTTTGGTGCCAGACCCGGCGTGGTGATTGAAGAAGGCGGCAAACAGCAGGT
CTATTTGCAGGGTGAACGGCTTGGCTCTCACAACGCAGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATC
AGGGGAAAATGGAACGTCTGAGTCTGGCAGAGGAGGAACGCCCCCCTGTGGCGGTGACCAGCAAAAAAGCCGCCAGCGAC
GAAGCAAAGCAAGCTGTTGCTGAACCTGTCGTCAGTGCGCCAGTGGAGATCCCGGCTGCCGTGCGTCAGGCACTGGCGAA
AGATCCGCAGAAAATTTTTAACTATATCCAGCTTACGCCTGTGCGTAAGGAGGGAATTGTCGGTTATGCAGTGAAGCCGG
GGGCAGATCGTTCTCTGTTCGATGCCAGCGGTTTCAGGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACT
GATCCACGAGCAATGATTGCTCTGATGCGGCAGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGC
GCGCTACGACATTTCCATCGCACTGCGCTAA

Protein sequence : 
MFWLMLLIISAKMAYSLWRYFSFSAEYTAVSSSVNKPLRADAKPFDKNDVQLVSQQNWFGKYQPVAAPVKQPESAPVAET
RLNVVLRGIAFGARPGVVIEEGGKQQVYLQGERLGSHNAVIEEINRDHVMLRYQGKMERLSLAEEERPPVAVTSKKAASD
EAKQAVAEPVVSAPVEIPAAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAVKPGADRSLFDASGFREGDIAIALNQQDFT
DPRAMIALMRQLPSMDSIQLTVLRKGARYDISIALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 2e-113 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yghF YP_002392952.1 type II secretion protein GspC VFG2046 Protein 2e-110 92