|
Name : yghD (ECS88_3335) Accession : YP_002392942.1 Strain : Escherichia coli S88 Genome accession: NC_011742 Putative virulence/resistance : Virulence Product : general secretion pathway protein YghD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3149 EC number : - Position : 3293941 - 3294477 bp Length : 537 bp Strand : - Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt : transporter DNA sequence : ATGTTACGCGATAAATTTATTCACTATTTTCAGCAATGGCGTGAACGCCAGTTAAGCCGTGGCGAACACTGGCTGACACA ACACTTGGCGGGGCGTTCTCCGCGCGAAAAGGGCATGTTACTGGCAGCGGTGGTGTTCCTGTTTAGCGTCGGATATTACG TCCTCATCTGGCAGCCGTTGAGCGAACGGATAGAACAACAGGAGACGATGTTGCAACAGCTGGTGGCAATGAACACCCGA CTGAAGAACGCCGCGCCGGATATTATTGCAGCGCGAAAATCTGCCACAACAACGCCTGCGCAGGTATCGCGGGTCATCAG TGACAGTGCTTCCGCGCACTCGGTGGCCATCAAGCGGATAGCCGAGCGTGGGGAGAATATTCAGGTCTGGATAGAACCTG TGGTGTTTAATGACCTTCTGAAATGGTTAAACGCACTGGATGAAAAATATGCGCTGCGGGTGACACAAATTGATGTCAGT GCTGCTGAGAAGCCTGGGATGGTGAATGTGCAGCGGCTGGAGTTTGGACGGGGGTAG Protein sequence : MLRDKFIHYFQQWRERQLSRGEHWLTQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETMLQQLVAMNTR LKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVAIKRIAERGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVS AAEKPGMVNVQRLEFGRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspM | YP_854398.1 | general secretion pathway protein YghD | Not tested | PAI I APEC-O1 | Protein | 2e-79 | 99 |
| yghD | CAI43907.1 | putative secretion pathway protein | Not tested | LEE | Protein | 3e-79 | 98 |
| gspM | CAE85225.1 | GspM, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-79 | 97 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yghD | YP_002392942.1 | general secretion pathway protein YghD | VFG2056 | Protein | 9e-58 | 97 |
