Gene Information

Name : papB (ECS88_3266)
Accession : YP_002392885.1
Strain : Escherichia coli S88
Genome accession: NC_011742
Putative virulence/resistance : Virulence
Product : pap operon regulatory protein PapB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3238898 - 3239212 bp
Length : 315 bp
Strand : -
Note : Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 2656260, 2868893; Product type r : regulator

DNA sequence : 
ATGGCGCATCATGAAGTCATCAGTCGGTCAGGAAATGCGTTTTTGCTGAATATACGCGAGAGCGTACTGTTGCCCGGCTC
TATGTCTGAAATGCATTTTTTTTTACTGATAGGTATTTCTTCTATTCACAGTGACAGGGTCATTCTGGCTATGAAGGACT
ATCTGGTAGGTGGGCACTCCCGTAAGGAGGTCTGCGAGAAATACCAGATGAATAATGGGTATTTCAGTACAACACTTGGG
AGACTTATACGGCTGAATGCTCTTGCAGCAAGGCTTGCACCTTATTATACAGATGAGTCGTCGGCATTTGACTGA

Protein sequence : 
MAHHEVISRSGNAFLLNIRESVLLPGSMSEMHFFLLIGISSIHSDRVILAMKDYLVGGHSRKEVCEKYQMNNGYFSTTLG
RLIRLNALAARLAPYYTDESSAFD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_3518 YP_854257.1 PapB-like protein Virulence PAI I APEC-O1 Protein 3e-37 100
papB YP_002414018.1 pap operon regulatory protein PapB Not tested Not named Protein 3e-37 100
papB AAC61719.1 PapB Virulence PAI I CFT073 Protein 2e-37 100
papB AAL67418.1 PapB Virulence PAI II CFT073 Protein 2e-37 100
papB AAZ04473.1 P pilus protein Virulence PAI I APEC-O1 Protein 2e-37 100
prfB CAD42032.1 PrfB protein Virulence PAI II 536 Protein 2e-36 97
sfaB CAC43422.1 SfaB protein Virulence PAI III 536 Protein 2e-31 81

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papB YP_002392885.1 pap operon regulatory protein PapB VFG1551 Protein 8e-37 97
papB YP_002392885.1 pap operon regulatory protein PapB VFG1641 Protein 6e-32 81
papB YP_002392885.1 pap operon regulatory protein PapB VFG0436 Protein 1e-17 55