Gene Information

Name : papA (ECS88_3265)
Accession : YP_002392884.1
Strain : Escherichia coli S88
Genome accession: NC_011742
Putative virulence/resistance : Virulence
Product : major pilin protein PapA
Function : -
COG functional category : N : Cell motility
COG ID : COG3539
EC number : -
Position : 3238143 - 3238724 bp
Length : 582 bp
Strand : -
Note : Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 6140260, 1357526, 10049807; Product type s : structure

DNA sequence : 
GTGTGTTCAGTAATGAAAAAGAGGTTGTTATTTATGATTAAGTCGGTTATTGCCGGTGCGGTAGCTATGGCAGTGGTGTC
TTTTGGTGTAAATGCTGCTCCAACTATTCCACAGGGGCAGGGTAAAGTAACTTTTAACGGAACTGTTGTTGATGCTCCAT
GCAGCATTTCTCAGAAATCAGCTGATCAGTCTATTGATTTTGGACAGCTTTCAAAAAGCTTCCTTGAGGCAGGAGGTACA
TCCAAGCCAATGGATTTAGATATTGAGTTAGTAAATTGCGATATTACAGCTTTTAAACAAGGTCAAGCAGCTAAAAACGG
TAAGGTTCAATTATCTTTTACTGGGCCACAAGTAACGGGGCAGGCTGAAGAATTAGCAACTAACGGCGGTACGGGCACAG
CTATTGTAGTTCAGGCTGCAGGCAAAAACGTTTCTTTCGATGGGACTGCAGGTGACGCTTATCCCCTGAAAGATGGTGAT
AATGTTCTTCATTATACAGCTCTTGTGAAAAAAGCGAATGGCGGTACTGTTTCTGAAGGTGCTTTTTCTGCAGTTGCAAC
CTTTAATTTAAGTTACCAGTAA

Protein sequence : 
MCSVMKKRLLFMIKSVIAGAVAMAVVSFGVNAAPTIPQGQGKVTFNGTVVDAPCSISQKSADQSIDFGQLSKSFLEAGGT
SKPMDLDIELVNCDITAFKQGQAAKNGKVQLSFTGPQVTGQAEELATNGGTGTAIVVQAAGKNVSFDGTAGDAYPLKDGD
NVLHYTALVKKANGGTVSEGAFSAVATFNLSYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papA AAZ04426.1 major fibrial protein Virulence PAI I APEC-O1 Protein 2e-82 100
papA YP_854256.1 major fibrial protein Virulence PAI I APEC-O1 Protein 2e-82 100
papA NP_755467.1 PapA protein Virulence PAI I CFT073 Protein 1e-50 66
papA_2 NP_757036.1 PapA protein Virulence PAI II CFT073 Protein 2e-55 66
papA AAC61718.1 PapA Virulence PAI I CFT073 Protein 1e-30 66
papA AAL67417.1 PapA Virulence PAI II CFT073 Protein 5e-53 65
papA YP_002414017.1 P-fimbriae major subunit Not tested Not named Protein 7e-43 62
prfA CAD42031.1 PrfA protein Virulence PAI II 536 Protein 2e-44 59
pixA CAE85161.1 PixA protein Not tested PAI V 536 Protein 2e-33 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papA YP_002392884.1 major pilin protein PapA VFG0882 Protein 3e-51 66
papA YP_002392884.1 major pilin protein PapA VFG0893 Protein 7e-56 66
papA YP_002392884.1 major pilin protein PapA VFG1550 Protein 9e-45 59