Gene Information

Name : papF (ECS88_3258)
Accession : YP_002392877.1
Strain : Escherichia coli S88
Genome accession: NC_011742
Putative virulence/resistance : Virulence
Product : Fimbrial adapter PapF precursor
Function : -
COG functional category : N : Cell motility
COG ID : COG3539
EC number : -
Position : 3231832 - 3232362 bp
Length : 531 bp
Strand : -
Note : Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 2869489, 2895103, 1357526, 8096174, 10049807; Product type s : structure

DNA sequence : 
ATGTTTTCTGTGCCGCTCTCCGGAGGGGGGATGATTCGTTTATCATTATTTATATCGTTGCTTCTGACATCGGTCGCTGT
ACTGGCTGATGTGCAGATTAACATCAGGGGAAATGTTTATATCCCCCCATGCACCATTAATAACGGGCAGAATATTGTTG
TCGATTTTGGGAATATTAATCCTGAGCACGTGGACAACTCACGTGGTGAAATCACAAAAACCATAAGCATATCCTGTACG
TATAAGAGTGGCTCACCCTGGATAAAGGTCACAGGTAATGCAATGGCTGGGCAGACTAATGTACTGGCAACAAATATAGC
CAATTTTGGTATAGCGTTGTATCAGGGAAAAGGAATGTCAACACCTCTTACATTAGGTAATGGTTCAGGAAATGGTTACA
GAGTGACAGCAGGTCTGGACACAGCACGTTCAACGTTCACCTTTACTTCAGTGCCCTTTCGTAATGGCAGCAGGACACTG
AATGGCGGGGATTTCCGGACCACGGCCAGTATGAGCATGATTTATAACTGA

Protein sequence : 
MFSVPLSGGGMIRLSLFISLLLTSVAVLADVQINIRGNVYIPPCTINNGQNIVVDFGNINPEHVDNSRGEITKTISISCT
YKSGSPWIKVTGNAMAGQTNVLATNIANFGIALYQGKGMSTPLTLGNGSGNGYRVTAGLDTARSTFTFTSVPFRNGSRTL
NGGDFRTTASMSMIYN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papF YP_854249.1 P pilus minor tip component PapF Virulence PAI I APEC-O1 Protein 3e-77 100
papF AAZ04419.1 P pilus minor tip component Virulence PAI I APEC-O1 Protein 2e-77 100
papF_2 NP_757028.1 PapF protein Virulence PAI II CFT073 Protein 9e-77 99
papF YP_002414010.1 Fimbrial adapter PapF Not tested Not named Protein 7e-77 99
papF NP_755459.1 PapF protein Virulence PAI I CFT073 Protein 9e-77 99
prfF CAD42024.1 PrfF protein Virulence PAI II 536 Protein 1e-67 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papF YP_002392877.1 Fimbrial adapter PapF precursor VFG0900 Protein 3e-77 99
papF YP_002392877.1 Fimbrial adapter PapF precursor VFG0889 Protein 3e-77 99
papF YP_002392877.1 Fimbrial adapter PapF precursor VFG1543 Protein 5e-68 94