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Name : yfcU (ECS88_2485) Accession : YP_002392163.1 Strain : Escherichia coli S88 Genome accession: NC_011742 Putative virulence/resistance : Virulence Product : export usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2480848 - 2483502 bp Length : 2655 bp Strand : - Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf : factor DNA sequence : ATGTGTATGCCTAATCACTCAAATTTTCGGCTGCGGGGAATCGCCTGCTATATTGCGCTGGCAATCTCTGGTGGATCAGT CAATGCATGGGCTGATGATTCAATTCAATTTGACCCCCGTTTCCTTGAGTTAAAGGGCGATACGAAAATTGATCTCGGTA AGTTTTCAAAAAAAGGGTATGTCGACGCGGGTAAATATAATTTACGTGTATTTATAAATAAACAACCCCTTTCTGATGAA TACGACATTAACTGGTACGTCTCTGAAAACGATCCAACAAAAAACTATGCCTGCCTGACACCTGAGTTAGTGGCGGCGCT GGGGCTGAAAGAAGGGATAGCAAAAAGCCTGCAGTGGACGCACAACGATGAATGCCTTAAACCAGGTCAATTAGACGGGA TGGAAGTCGAGAATGATTTAAGCCAGTCGGCGTTGCTGCTGACAGTGCCACAGGCTTACCTCGAATATACCAGCAGCGAC TGGGACCCTCCCTCACGTTGGGACGACGGTATTCCTGGCCTGATTGCCGACTACAGCCTCAATGCGCAAACTCGCCACCA GGAGCAGGGGGGCGAGGACTCACATGATATCAGCGGCAACGGTACCGTTGGGGCGAACCTGGGGGCATGGCGTTTCCGTG CAGACTGGCAAAGTGATTATCAGCACACCCGCAGCAACGATGACGACGATGACAGCAGTAACAGTACAACGAGCAAAAAC TGGGACTGGAGCCGTTATTACGCCTGGCGGGCCTTACCCTCTTTAAAAGCGAAGCTGTCGCTGGGGGAAGATTATCTCAA TTCCGATATTTTCGACGGCTTTAACTATATCGGCAGCAGCGTCAGCACCGATGACCAGATGCTGCCGCCCAACCTGCGCG GCTATGCGCCGGATGTCTCCGGCGTGGCGCACAGCAGTGCAAAAGTCACCATTAGCCAGATGGGCCGGGTACTTTACGAA ACCCAGGTTCCCGCCGGGCCATTCCGCATTCAGGATATCGGCGACTCCGTCTCCGGCACACTGCACGTCCGCGTTGAAGA ACAGAATGGTCAGGTGCAGGAATATGACGTTACCACCGCATCTATGCCATTCCTCACGCGCCAGGGGCAGGTGCGTTACA AAGTGATGATGGGGCGTCCGGAAGACTGGAACCACAAGACCGAAGGCGGCTTTTTCTCCGGCGGAGAAGCGTCATGGGGG GTGGCAGATGGCTGGTCGCTCTACGGTGGTGCGCTGGCAGATAAACACTATCAGTCGGCGGCGATGGGGGTGGGGCGCGA CCTCGCACAGTTTGGCGCGCTGGCGTTCGATGTGACTCACTCGCACGTCAACCTGGATCATGACAGCGCATACGGCAAAG GAAAACTGGACGGCAACTCCTTTCGCGTGAGCTATGCCAAAGACTTTGACGAACTCAACAGCCGCGTCACCTTTGCAGGC TACCGTTTTTCTGAAAAGAACTTCATGACCATGAGCGAGTATCTGGACGCGAACCAGTCGGACATGGCGCGGACCGGTAA CGACAAAGAGATGTATACGATCACCTATAACCAGAACTTTGCCGCTGCGGGTGTTTCGATCTATCTCAACTACTCCCATC GTACTTACTGGGATCGCCCGGAACAGACAAACTATAACCTGATGTTTTCCCACTATTTTAATATGGGGAGCATTCGCAAC ATGAGCATCTCGGTGACCGGCTATCGCTACGAATATGACGATAATGCGGATAAGGGGATGTACCTCAGTATGAGCATTCC GTGGAGCGACAGCAGCACCGTGACCTACAACGGTTCCTACGGCAGCGGATCGGACAGCAGCCAGGTCGGTTACTTTAAGC GCGTCGATGACGCAACGCACTACCAGGTTAACGTTGGCACCAGCGAGCAGCACGGCAGCGTGGATGGTTATCTGAGCCAC GACGGTTCGCTGGCGAAGGTTGATCTCAGCGCCAACTACCATGAAGGGGAATACCGTTCGGCGGGGATCGCCTTACAGGG CGGGGCAACGCTGACCGCGCATGGTGGGGCCCTGCACCGTACCCAGAACATGGGCGGCACGCGCCTGCTGATTGACGCCG ACGGGATTGCCAACGTGCCGGTCGAAAGCAACGGCGCGCCGGTGTACACCAATATGTTTGGCAAGGCGGTGGTCGCCGAT ATTAACAACTACTATCGCAATCAGGCGTATATCGATTTAAACAACTTGCCGGAAGATGCGGAAGCCACCCAGTCGGTGGT GCAGGCAACCCTGACGGAAGGCGCAATCGGCTATCGCAAATTCAAAGTGATCAGCGGGCAAAAAGCGATGGCGGTACTGA GGTTGCGTGACGGTAGCTACCCGCCGTTTGGCGCGGAAGTGAAAAATGACGAGCAGCAGCAGGTTGGCATTGTGGATGAT GAAGGCAATGTCTATCTGGCGGGGGTCAATGCGGGCGAGCATATGATGGTGTTCTGGGAAGGCAGCGCACAATGCGAGAT CGTATTGCCGAAGCCGCTACCTGCCGATTTGTTCAGCGGCCTGTTGTTGCCGTGTGAACAAAAGGGAACGGCAGCCCCTG ATTCTTCAGCGCCAGAAATTAAGCCTGTTATTCAGGACCAGACGCGGCAAGTCACACCAACGGAAGCGCCGACGTCAATT TCAGCAACTCAATAA Protein sequence : MCMPNHSNFRLRGIACYIALAISGGSVNAWADDSIQFDPRFLELKGDTKIDLGKFSKKGYVDAGKYNLRVFINKQPLSDE YDINWYVSENDPTKNYACLTPELVAALGLKEGIAKSLQWTHNDECLKPGQLDGMEVENDLSQSALLLTVPQAYLEYTSSD WDPPSRWDDGIPGLIADYSLNAQTRHQEQGGEDSHDISGNGTVGANLGAWRFRADWQSDYQHTRSNDDDDDSSNSTTSKN WDWSRYYAWRALPSLKAKLSLGEDYLNSDIFDGFNYIGSSVSTDDQMLPPNLRGYAPDVSGVAHSSAKVTISQMGRVLYE TQVPAGPFRIQDIGDSVSGTLHVRVEEQNGQVQEYDVTTASMPFLTRQGQVRYKVMMGRPEDWNHKTEGGFFSGGEASWG VADGWSLYGGALADKHYQSAAMGVGRDLAQFGALAFDVTHSHVNLDHDSAYGKGKLDGNSFRVSYAKDFDELNSRVTFAG YRFSEKNFMTMSEYLDANQSDMARTGNDKEMYTITYNQNFAAAGVSIYLNYSHRTYWDRPEQTNYNLMFSHYFNMGSIRN MSISVTGYRYEYDDNADKGMYLSMSIPWSDSSTVTYNGSYGSGSDSSQVGYFKRVDDATHYQVNVGTSEQHGSVDGYLSH DGSLAKVDLSANYHEGEYRSAGIALQGGATLTAHGGALHRTQNMGGTRLLIDADGIANVPVESNGAPVYTNMFGKAVVAD INNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFKVISGQKAMAVLRLRDGSYPPFGAEVKNDEQQQVGIVDD EGNVYLAGVNAGEHMMVFWEGSAQCEIVLPKPLPADLFSGLLLPCEQKGTAAPDSSAPEIKPVIQDQTRQVTPTEAPTSI SATQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 2e-144 | 43 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 4e-138 | 42 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 4e-137 | 42 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 6e-137 | 42 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 5e-138 | 42 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 6e-138 | 42 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 5e-138 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yfcU | YP_002392163.1 | export usher protein | VFG1548 | Protein | 3e-138 | 42 |
| yfcU | YP_002392163.1 | export usher protein | VFG0884 | Protein | 2e-138 | 42 |
| yfcU | YP_002392163.1 | export usher protein | VFG0895 | Protein | 2e-138 | 42 |
