Gene Information

Name : ECS88_2081 (ECS88_2081)
Accession : YP_002391779.1
Strain : Escherichia coli S88
Genome accession: NC_011742
Putative virulence/resistance : Unknown
Product : transposase OrfA from plasmid origin
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 2059737 - 2060162 bp
Length : 426 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type h : extrachromosomal origin

DNA sequence : 
ATGGAATTACAGGACTGGCGAAAAGAACCTCGTAAAAACTATTCGAATGAATTCAAACTTCGTATGGTGGAACTGGCATC
ACAACCTGGAGCTTGTGTTGCACAGATTGCACGTGAAAATGGCGTCAATGATAATGTTATTTTCAAATGGCTCAGGCTCT
GGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAA
ATAACGCCGGATGAGCAGAAAAAACCTGTGGCGGCCATTGCGCCGTCTTTATCCACTTCCACTCAGACCAGAGTCAGTGC
CAGTTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCATCGCCAGAGCTGCTCACGGTGTTGATCC
GCGAACTGAGCGGGAGGGGAAGATGA

Protein sequence : 
MELQDWRKEPRKNYSNEFKLRMVELASQPGACVAQIARENGVNDNVIFKWLRLWQNEGRVSRRLPVTTSSDTGVELLPVE
ITPDEQKKPVAAIAPSLSTSTQTRVSASSCKVEFRHGNMTLENPSPELLTVLIRELSGRGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3566 YP_003223429.1 hypothetical protein Not tested LEE Protein 4e-60 98
Z1208 NP_286743.1 hypothetical protein Not tested TAI Protein 8e-57 91
Z1648 NP_287151.1 hypothetical protein Not tested TAI Protein 4e-56 90
unnamed CAD66197.1 hypothetical protein Not tested PAI III 536 Protein 4e-45 90
Z1598 NP_287102.1 hypothetical protein Not tested TAI Protein 2e-48 81
Z1159 NP_286694.1 hypothetical protein Not tested TAI Protein 2e-48 81
unnamed CAD66191.1 hypothetical protein Not tested PAI III 536 Protein 1e-45 76
ECUMN_3365 YP_002414038.1 putative transposase Not tested Not named Protein 5e-32 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECS88_2081 YP_002391779.1 transposase OrfA from plasmid origin VFG1672 Protein 2e-45 90
ECS88_2081 YP_002391779.1 transposase OrfA from plasmid origin VFG1666 Protein 5e-46 76
ECS88_2081 YP_002391779.1 transposase OrfA from plasmid origin VFG1738 Protein 1e-32 56