|
Name : irp (ECS88_2034) Accession : YP_002391745.1 Strain : Escherichia coli S88 Genome accession: NC_011742 Putative virulence/resistance : Virulence Product : permease and ATP-binding protein of yersiniabactin-iron ABC transporter YbtQ Function : - COG functional category : V : Defense mechanisms COG ID : COG1132 EC number : - Position : 2002526 - 2004355 bp Length : 1830 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10231486, 11320115; Product type t : transporter DNA sequence : GTGGAACACAGGAAGAGGTGGTGGAAAATGAAAGACAATAATCCTGCGGATAACCTGGCCTGGCGCGTCATCTGGCGCCA GCTTATCTCCAGCGTTGGCAGTCAGGCCAGGATGCTGCGACGCAGTATGCTGGCGCTGTTGCTGGCGGCATTCATGCAGG GGATCGCCTTTGCCTGTCTTTATCCGATCATTGATGCGCTGTTACGGGGAGACGCGCCGCAACTTCTTAACTGGGCTATG GCCTTCAGCGTCGCCGCAATTGTGACGCTGGTGCTACGCTGGTATGGCCTGGGCTTTGAATACCGTGGTCATCTGGCGCA GGCTACCCATGAGTTGCGCCTGCGACTTGGCGAGCAGTTACGCCGCGTGCCGCTGGAGAAGCTCCAGCGCGGCAGGGCGG GTGAAATGAACGCCTTGCTGCTGGGCAGCGTGGATGAAAACCTCAATTATGTTATTGCGATAGCCAATATTTTGCTGCTC ACCATTGTCACGCCGCTGACGGCGTCGCTGGCGACATTGTGGATAGACTGGCGGCTGGGGCTGGTGATGTTGCTGATCTT CCCTCTGCTGGTGCCGTTTTATTACTGGCGCCGCCCGGCGATGCGGCGACAAATGCAGACGCTGGGGGAAGCGCACCAGC GTCTGAGCGGCGATATCGTTGAATTTGCTCAGGGGATGATGGTATTGCGCACCTGCGGCAGCGATGCCGATAAAAGCCGG GCGCTGCTGGCGCATTTCAATGCGCTGGAAAACTTACAGACCCGCACTCACCGTCAGGGCGCTGGCGCAACGATGCTGAT CGCCAGCGTCGTGGAGTTGGGCCTACAGGTGGTGGTGTTATCCGGGATCGTCTGGGTAGTGACGGGCACTCTGAACCTCG CCTTTTTGATTGCCGCCGTCGCGATGATTATGCGCTTCGCAGAACCGATGGCGATGTTTATCAGCTACACCTCGGTTGTG GAACTGATCGCCAGCGCCCTGCAACGGATTGAGCAGTTTATGGCGATAGCACCGCTTCCCGTCGCAGAGCAAAGCGAGAT GCCGGAACGTTACGATATCAGCTTTGACAACGTCAGCTATCGCTACGAAGAAGGTGACGGCCACGCGCTTAATCATGTTT CTTTGACGTTCCCGGCAGCCAGTATGAGCGCGCTGGTGGGTGCCTCCGGCGCAGGCAAAACTACGGTCACCAAACTGTTA ATGCGCTATGCCGATCCGCAGCAAGGGCAGATTTCTATTGGCGGCGTCGATATTCGCCGCCTGACGCCGGAACAGCTCAA TAGCCTGATTTCTGTTGTTTTCCAGGATGTCTGGCTGTTTGATGACACGCTGCTGGCGAATATCCGTATCGCGCGCCCAC AGGCGACGCGGCAGGAGGTAGAAGAGGCCGCCCGCGCGGCGCAGTGCCTTGAGTTTATTTCCCGTCTTCCGCAAGGCTGG CTGACGCCAATGGGAGAGATGGGCGGCCAGCTATCGGGCGGCGAGCGCCAGCGGATTTCCATTGCCAGAGCGTTATTGAA AAACGCGCCGGTCGTCATTCTCGATGAACCGACTGCCGCGCTGGATATTGAAAGCGAGCTGGCGGTGCAAAAAGCGATCG ATAACCTGGTTCACAACCGGACGGTGATTATCATCGCTCACCGTTTATCCACCATCGCCGGGGCCGGAAACATTCTGGTG ATGGAAGAGGGACAGGTGGTTGAGCAGGGTACTCATGCGCAATTGCTCTCACATCATGGACGTTATCAGGCGCTGTGGCA GGCGCAAATGGCCGCGCGCGTGTGGCGCGACGACGGGGGTTCCGCGTCTGGAGAGTGGGTGCATGAGTGA Protein sequence : MEHRKRWWKMKDNNPADNLAWRVIWRQLISSVGSQARMLRRSMLALLLAAFMQGIAFACLYPIIDALLRGDAPQLLNWAM AFSVAAIVTLVLRWYGLGFEYRGHLAQATHELRLRLGEQLRRVPLEKLQRGRAGEMNALLLGSVDENLNYVIAIANILLL TIVTPLTASLATLWIDWRLGLVMLLIFPLLVPFYYWRRPAMRRQMQTLGEAHQRLSGDIVEFAQGMMVLRTCGSDADKSR ALLAHFNALENLQTRTHRQGAGATMLIASVVELGLQVVVLSGIVWVVTGTLNLAFLIAAVAMIMRFAEPMAMFISYTSVV ELIASALQRIEQFMAIAPLPVAEQSEMPERYDISFDNVSYRYEEGDGHALNHVSLTFPAASMSALVGASGAGKTTVTKLL MRYADPQQGQISIGGVDIRRLTPEQLNSLISVVFQDVWLFDDTLLANIRIARPQATRQEVEEAARAAQCLEFISRLPQGW LTPMGEMGGQLSGGERQRISIARALLKNAPVVILDEPTAALDIESELAVQKAIDNLVHNRTVIIIAHRLSTIAGAGNILV MEEGQVVEQGTHAQLLSHHGRYQALWQAQMAARVWRDDGGSASGEWVHE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| APECO1_1055 | YP_853072.1 | ABC transporter | Not tested | PAI IV APEC-O1 | Protein | 0.0 | 100 |
| ybtQ | NP_669703.1 | permease and ATP-binding protein of yersiniabactin-iron ABC transporter | Virulence | HPI | Protein | 0.0 | 99 |
| ybtQ | NP_993010.1 | ABC transporter permease | Virulence | HPI | Protein | 0.0 | 99 |
| ybtQ | YP_070127.1 | ABC transporter permease | Virulence | HPI | Protein | 0.0 | 99 |
| ybtQ | CAA21387.1 | - | Virulence | HPI | Protein | 0.0 | 99 |
| irp7 | CAB46572.1 | inner membrane ABC-transporter, Irp7 | Virulence | HPI | Protein | 0.0 | 99 |
| irp7 | YP_001006812.1 | inner membrane ABC-transporter YbtQ | Not tested | HPI | Protein | 0.0 | 99 |
| irp7 | YP_002346905.1 | ABC transporter permease | Not tested | HPI | Protein | 0.0 | 99 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| irp | YP_002391745.1 | permease and ATP-binding protein of yersiniabactin-iron ABC transporter YbtQ | BAC0433 | Protein | 0.0 | 99 |
