Gene Information

Name : ycbR (ECIAI1_0980)
Accession : YP_002386439.1
Strain : Escherichia coli IAI1
Genome accession: NC_011741
Putative virulence/resistance : Virulence
Product : putative periplasmic pilin chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 1050920 - 1051621 bp
Length : 702 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf : putative factor

DNA sequence : 
ATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGC
AGGTAAAGGCGGGATTGGACTTGCAGCAACACGTCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTA
ACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGATTTTATTATT
ACACCACCGCTATTTGTGCTGAATCCGGCTAATGAGAATCTGTTACGCATTATGTACATTGGTGCGCCGTTGGCGAAAGA
CAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGGAAGAGGGAAATACCCTGAAGATTG
CCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGGTTTAGCGTATCCCTTAGGCGAGGCTCCGGCGAAACTGCGT
TGCACTTCGTCAGCTGACATGGTTACGGTCAGTAACCCAACACCTTATTTCATTACCCTGACAGACCTGAAAATAGGTGG
AAAAGTAGTTAAAAATCAAATGATTTCCCCCTTTGATAAATACCAATTTTCTCTGCCAAAGGGGGCCAAAAATAGCAGCG
TAACGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAA

Protein sequence : 
MKTCITKGIVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFII
TPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLR
CTSSADMVTVSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 3e-37 45
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 1e-38 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ycbR YP_002386439.1 putative periplasmic pilin chaperone VFG1644 Protein 2e-37 45
ycbR YP_002386439.1 putative periplasmic pilin chaperone VFG0875 Protein 1e-38 45
ycbR YP_002386439.1 putative periplasmic pilin chaperone VFG0911 Protein 1e-37 44
ycbR YP_002386439.1 putative periplasmic pilin chaperone VFG0445 Protein 9e-38 43