Gene Information

Name : lpfC (ECIAI1_3709)
Accession : YP_002389017.1
Strain : Escherichia coli IAI1
Genome accession: NC_011741
Putative virulence/resistance : Virulence
Product : outer membrane usher protein lpfC
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 3777656 - 3780187 bp
Length : 2532 bp
Strand : -
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 14977923; Product type m : membrane component

DNA sequence :
ATGCATTGGATGCATTTACCTCTCTATCACTACAGAGCGCATTTTTCCTTCTCTCTGCTGGCATTAACGATTGCCAGCTC
GTTACCTGCGTATGGCGGAAAATTTAACCCTAAATTTCTCGAAAACGTTCAGGGTATCGATCAACACATCGACTTGTCGG
TATACGACTCACCTGTCGGCCAGCAAATCCCCGGTAAATACCGGGTTTCGGTGTTTGTAAACGAAGAAAAAATGGCTTCC
CGGACGCTGGATTTTAGTACCGCCAGCGAAGCGAAACGCAAAGCCAGCGGTGAGTCGCTTATGCCTTGCCTTAGCCGGGT
GCAACTGGAAGAAATGGGCGTGCGCGTTGACAGCTTTCCGGCGCTGAAGATGTCACCACCAGAAGCCTGCGTAGCGTTTG
ATGAAATCATTCCCCAGGCCACCAGCCGCTTTGATTTTAATACTCAGACGCTGCATCTTTCCTTTCCACAGGCGGCAATG
ATGATGACCGCTCGCGGCACGGTTGATCCTTCTCGCTGGGACGAAGGAATACCTGCGCTGTTGCTGGATTACAGCTTTAG
TGGCAGCAATGGACGCAATGAAGGTACAGGTTCATCTTCAGATTCGACCAGTGACAGTTATTACCTGAACCTGCGCAGCG
GTTTGAACGTTGGTCCGTGGCGTTTACGTAATAACAGTATCTGGAACCGTACCGATGGCAAAAACCAATGGGATAACGTT
GGTACATCGTTAAACCGGGCAATTATTCCACTTAAATCACAGATAACTCTGGGTGATACCGCCACGCCTGGCGAGATTTT
TGATAGCGTACAAATGCGTGGGGCGTTACTGGCATCCGACGATGAAATGTTGCCGGACAGCCAGCGTGGCTTTGCTCCGG
TAGTGCGCGGCATCGCCAAAAGCAACGCTGAAGTGAGTATCGAACAGAACGGCTATGTCATTTATCGCACTTTTGTTCAG
CCGGGTGCATTTGAGATTAACGATCTCTACGCAACCTCCGGCAGCGGCGACCTGACGGTGATCATTAAAGAAGCCGACGG
AAGTGAACAACGTTTTATCCAGCCGTTTTCGGCGGTGGCGATTTTCCAGCGTGAAGGGTATCTGAAATACAGTCTGGCTG
CCGGTGAATATCGTGCTGGTAATTACGACAGCGATAAACCACATTTCGGGCAGTTTACCGCCATGTACGGCTTGCCGTGG
GGTATGACCGCCTACGGTGGTGCATTGTTGTCGGCAGATTACAACGCTTTAGCTCTGGGCCTGGGGAAAAACTTCGGTAC
CATTGGCGCAGTATCGGTGGATGTCACTCAGGCGAAAAGTCAGTTACGCAACAATGAAAAAGAGGAAGGCCAGTCTTATC
GCTTCCTCTATTCGAAAAGTTTTGAGGGTGGCACTGACCTGCGTCTGTTGGGCTACAAATACTCAACCAGCGGCTACTAC
ACCTTCCAGGAAGCAACTGATGTTCGCAGTGACGCCGACAGTGATTACCGCCGTTATCACAAGCGCAGCCAGATACAGGG
CAATATTACCCAGCAACTGGGAGACTACGGCTCGGTTTATTTCAATATGACGCAGCAGGATTACTGGAACGTTGACGGTA
AGGAAAACTCCTTAAGCGCCGGTTATCACGGTCACATTGGTCGGGTGAATTACAGCGTGGCCTATACCTGGACGAGAAGT
CCGGAATGGGAAGAAGACGATCGCTTGTGGTCATTCAGTGTTTCCATCCCTCTGGGGGGCGCGTGGAGCAGTTATCGCAT
GACTACCGACCAGAATGGCAAGACGTCGCAACAGGCCTCTGTTAGCGGCACGTTACTGGAAGATCGTAACCTGAGCTATA
ACGTTCAGCAGGGTTACACCAGTAATGGCGTAGGCTACAGTGGCAGCGTCAACATGGGGTATATGGGTGGCTCTGGTAAC
ATTGACGTAGGCTATAACTATTCTAAAGATAACCAACAGGTTAACTATGGCGTGCGCGGCGGTGTCATCGTTCACAGTGA
AGGTATAACGCTTTCGCAGCCTTTAGGCGAAAGTCTGGCGATTGTTTCTGCACCGGGCGCGCGTGGTGGACATGTGGTTA
ACAGCAGCGGCGTAGAAGTTGACTGGATGGGCAACGCCGTGGTGCCTTATCTCACACCATATCGTGAAACCATTGTGGAA
TTGCGTAGCGACACGTTGGGGCAAAACGTTGAACTACAGGAAGCGTTCCAGAAAGTCGTGCCTACTCGTGGTGCAGTTGT
GCGTTCCCGCTTTGATACCCGCGTCGGTTACCGTGTGCTGATGAGCTTAAAACAGGCGAATGGCAACGCAGTACCGTTTG
GTGCAACCGCAGCGTTAATTGATGAGAGCAAACCTGCCAGCAGCATTGTGGGTGAAGAAGGACAGCTTTATATCAGCGGG
ATGCCAGAAGAGGGCGAATTGCAGGTGAGCTGGGGGAACGAGCAGGCGCAACGTTGCCGTGTGCCATTCCGCTTGCCAGA
GAACAAGGACAATGCGGCTATCGTGATGGTTAATGCGGTATGCGAGAAATAA

Protein sequence :
MHWMHLPLYHYRAHFSFSLLALTIASSLPAYGGKFNPKFLENVQGIDQHIDLSVYDSPVGQQIPGKYRVSVFVNEEKMAS
RTLDFSTASEAKRKASGESLMPCLSRVQLEEMGVRVDSFPALKMSPPEACVAFDEIIPQATSRFDFNTQTLHLSFPQAAM
MMTARGTVDPSRWDEGIPALLLDYSFSGSNGRNEGTGSSSDSTSDSYYLNLRSGLNVGPWRLRNNSIWNRTDGKNQWDNV
GTSLNRAIIPLKSQITLGDTATPGEIFDSVQMRGALLASDDEMLPDSQRGFAPVVRGIAKSNAEVSIEQNGYVIYRTFVQ
PGAFEINDLYATSGSGDLTVIIKEADGSEQRFIQPFSAVAIFQREGYLKYSLAAGEYRAGNYDSDKPHFGQFTAMYGLPW
GMTAYGGALLSADYNALALGLGKNFGTIGAVSVDVTQAKSQLRNNEKEEGQSYRFLYSKSFEGGTDLRLLGYKYSTSGYY
TFQEATDVRSDADSDYRRYHKRSQIQGNITQQLGDYGSVYFNMTQQDYWNVDGKENSLSAGYHGHIGRVNYSVAYTWTRS
PEWEEDDRLWSFSVSIPLGGAWSSYRMTTDQNGKTSQQASVSGTLLEDRNLSYNVQQGYTSNGVGYSGSVNMGYMGGSGN
IDVGYNYSKDNQQVNYGVRGGVIVHSEGITLSQPLGESLAIVSAPGARGGHVVNSSGVEVDWMGNAVVPYLTPYRETIVE
LRSDTLGQNVELQEAFQKVVPTRGAVVRSRFDTRVGYRVLMSLKQANGNAVPFGATAALIDESKPASSIVGEEGQLYISG
MPEEGELQVSWGNEQAQRCRVPFRLPENKDNAAIVMVNAVCEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 4e-163 43
lpfC YP_006098365.1 fimbrial outer membrane usher protein Not tested Tn2411 Protein 1e-139 41
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 1e-163 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lpfC YP_002389017.1 outer membrane usher protein lpfC VFG0454 Protein 0.0 74
lpfC YP_002389017.1 outer membrane usher protein lpfC VFG0876 Protein 1e-167 44
lpfC YP_002389017.1 outer membrane usher protein lpfC VFG0446 Protein 5e-155 42
lpfC YP_002389017.1 outer membrane usher protein lpfC VFG1645 Protein 7e-164 41
lpfC YP_002389017.1 outer membrane usher protein lpfC VFG0912 Protein 2e-163 41