Gene Information

Name : int (EFER_0816)
Accession : YP_002381990.1
Strain : Escherichia fergusonii ATCC 35469
Genome accession: NC_011740
Putative virulence/resistance : Unknown
Product : phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 831724 - 833058 bp
Length : 1335 bp
Strand : -
Note : Evidence 2b : Function of strongly homologous gene; Product type h : extrachromosomal origin

DNA sequence : 
GTGATGGTATTCCCCAGTTCGATATGCAGATACCATCAATTTACCAAAATGAGTACAGATATGGCCATTAATGTGCTTTC
CCCCAAACAGATAGAAAACGCCAAGCCGAAGACCAATGATTACAAACTTACCGATGGAGGGAGTTTGTATCTACTGGTAC
GAAAGACTGGTGGAAAATACTGGCGTATGAATTATCGTTTTGATGGAAAACAAGTGACATTGGCATTAGGGGTCTACCCA
GATGTCTCACTTGCAACAGCGCGGAAACGGCGTGATGAAGCCAGGCAACTACTAGCCGATGGCCGTGATCCTCGCGAAGC
AAAGAAACCCAAAAAGGAAGACCCAATTTCCCCCACGTTCGAGAGTGTTGCCAGAGAGTGGCATAGTGGAACGATGGGGC
ATCCTGAGTGGAAAGAGATCACCCGTAAAAAAATTCTCCGAGAAATGGAAAACCACCTCTTTCCTGCCATCGGTTCAAAG
CCTATCGATACGCTCAAAACCCGTGACTTGATGCCGATGCTGGTTGAGATGACTGAGAAAGGAATTGGTGCCACAACGAG
CCGGGTAAAAACCACTATGACGAGCATCTTCCGTTATGCCGTGCAACGTGGAATTGTCGATTACAACCCTGCCCACGATC
TAAAAGGTGCAATTACGGCCCCCAAAGTACGACATCGCCCCGCACTACCTCTCGAACGTTTACCTGAACTGTTAGCGAAA
ACGAGAAGTTACACGGGAAGACCATTGACTCGCCTAGCAGTTCTCTTTTCCCTGCACACTTTTGTGCGATCCAGCGAACT
ACGACATGCCAGATGGGAGGAGATCGACATTGAAAATGGGCTATGGACGATACCAGGACAACGTGAAGAGATCGCAGGGG
TTAAATTCTCAGATCGGGGTGCAAAGATGGGGGCTGCTCATTATGTCCCGCTATCTAGTCAGGCTATCGGGGTACTGGAG
GATATAAGGAAAATCAGTGGTGAATATCTGCTGGTTTTCCCCGGTGACAGCAACCCATATAAACCGATGAGCGAAAACAC
AGTTAATAAAGCACTGCGAACGATGGGTTACGACACTCAAACTGATGTATGCTTACATGGGTTCAGGGCGATGGCCTGCT
CTGCACTGACCGAATCAGGACTCTGGTCACGCGATGCAGTTGAACGGCAGATGAGTCACCAAGAAAGAAACGAAGTGCGG
GCAGCATATGTGCATCTTGCGCAGCACATGCAGGAACGCCGCAGAATGATGCAATGGTGGTCTAATTATCTGGAACTAAA
TAAGGACGAATTTCATGCTCCTTATGACTTATCAGGTATTAACATTATCAATTAA

Protein sequence : 
MMVFPSSICRYHQFTKMSTDMAINVLSPKQIENAKPKTNDYKLTDGGSLYLLVRKTGGKYWRMNYRFDGKQVTLALGVYP
DVSLATARKRRDEARQLLADGRDPREAKKPKKEDPISPTFESVAREWHSGTMGHPEWKEITRKKILREMENHLFPAIGSK
PIDTLKTRDLMPMLVEMTEKGIGATTSRVKTTMTSIFRYAVQRGIVDYNPAHDLKGAITAPKVRHRPALPLERLPELLAK
TRSYTGRPLTRLAVLFSLHTFVRSSELRHARWEEIDIENGLWTIPGQREEIAGVKFSDRGAKMGAAHYVPLSSQAIGVLE
DIRKISGEYLLVFPGDSNPYKPMSENTVNKALRTMGYDTQTDVCLHGFRAMACSALTESGLWSRDAVERQMSHQERNEVR
AAYVHLAQHMQERRRMMQWWSNYLELNKDEFHAPYDLSGINIIN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 9e-102 56
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 9e-102 56
int AAK00456.1 Int Not tested SHI-1 Protein 2e-102 55
int CAC81896.1 integrase Not tested LEE II Protein 2e-103 55
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-109 55
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-109 55
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-109 55
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-109 55
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-109 55
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-109 55
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-109 55
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 9e-108 54
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-100 54
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-108 54
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-108 54
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-108 54
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-108 54
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-108 54
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-109 54
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-108 54
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-109 54
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 6e-107 54
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-109 54
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-108 54
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-80 52
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 6e-97 52
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 3e-95 52
int CAB59974.1 integrase Not tested HPI Protein 1e-100 51
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 4e-100 51
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 4e-100 51
int YP_002346908.1 integrase Not tested HPI Protein 1e-98 50
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-98 50
int2 NP_993013.1 integrase Not tested HPI Protein 1e-98 50
int CAA21384.1 - Not tested HPI Protein 1e-98 50
int CAA08754.1 integrase Not tested HPI Protein 3e-99 50
unnamed AAD17660.1 unknown Not tested HPI Protein 4e-96 49
int AAD44730.1 Int Not tested SHI-2 Protein 5e-66 41
aec33 AAW51716.1 Int Not tested AGI-3 Protein 8e-67 41
int CAC39282.1 integrase Not tested LPA Protein 7e-67 41
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-65 41
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-65 41
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
int YP_002381990.1 phage integrase VFG1536 Protein 1e-100 54
int YP_002381990.1 phage integrase VFG0626 Protein 1e-108 54
int YP_002381990.1 phage integrase VFG1693 Protein 5e-109 54
int YP_002381990.1 phage integrase VFG0598 Protein 8e-66 41