Gene Information

Name : qseB (EFER_2967)
Accession : YP_002384066.1
Strain : Escherichia fergusonii ATCC 35469
Genome accession: NC_011740
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3036645 - 3037304 bp
Length : 660 bp
Strand : +
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes

DNA sequence : 
ATGCGAATTTTACTTATCGAAGACGATCGTTTGATTGGCGACGGCATTAAAACGGGCTTAAGTAAAATGGGATTCAGTGT
TGACTGGTTTACCGGGGGGCGCGAGGGCAAAGAGGCGCTTTATAGTGCCCCCTATGACGCAATCATTCTTGATCTGACCT
TACCGGGTATAGATGGGCGCGATATTCTGCGGGAGTGGCGGGAAAACGGTAAACGGGAACCAGTACTGATTCTCACCGCT
CGGGATGCGCTGGCTGAGCGGGTTGAAGGTCTGCGTCTGGGAGCTGATGACTATTTATGCAAGCCTTTTGCGCTGATTGA
AGTCGCCGCTCGACTGGAAGCCCTGATCCGTCGAGCCAGCGGCCAGGCCAGCAATGAACTGCACCACGGAAAGGTCATTC
TCGACCCGGGTAAAAGGGTTGCAACGCTTGCAGGCGAACCACTCCCCCTGAAGCCGAAAGAATTTGCCCTGCTGGAACTG
TTGATGCGTAACGTCGGAAGGGTACTGCCACGTAAATTGATTGAAGAAAAACTCTATACCTGGGATGAAGAAGTGACCAG
TAATGCCGTAGAAGTCCATATTCATCACCTGCGGCGTAAACTCGGCAGCGGGTTTATCCGCACTGTTCATGGTATTGGTT
ACACGTTAGGTGAGGCATGA

Protein sequence : 
MRILLIEDDRLIGDGIKTGLSKMGFSVDWFTGGREGKEALYSAPYDAIILDLTLPGIDGRDILREWRENGKREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRASGQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLEL
LMRNVGRVLPRKLIEEKLYTWDEEVTSNAVEVHIHHLRRKLGSGFIRTVHGIGYTLGEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-39 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_002384066.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 3e-40 44
qseB YP_002384066.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 2e-36 43
qseB YP_002384066.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 1e-30 43
qseB YP_002384066.1 DNA-binding transcriptional regulator QseB NC_002516.2.879194.p Protein 2e-31 42
qseB YP_002384066.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 2e-34 42
qseB YP_002384066.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 2e-32 41
qseB YP_002384066.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 8e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_002384066.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 1e-39 44
qseB YP_002384066.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 2e-31 41