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Name : ldcC (EFER_0209) Accession : YP_002381432.1 Strain : Escherichia fergusonii ATCC 35469 Genome accession: NC_011740 Putative virulence/resistance : Virulence Product : lysine decarboxylase 2 Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.18 Position : 231143 - 233284 bp Length : 2142 bp Strand : + Note : Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 97480927, 98195734, 98357244, 9226257, 9723924; Product type e : enzyme DNA sequence : ATGAATATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGCCCATCAAAGAACTGGAGTCGGCGCTGGT GGCGCAAGGTTTTCAGATTATCTGGCCACAAAACAGCGTTGATTTGCTGAAATTTATCGAACACAACCCACGAATATGCG GCGTGATTTTTGACTGGGATGAATACAGTCTCGATTTATGTAGCGATATCAATCAACTTAATGAATATCTCCCGCTTTAT GCCTTCATCAATACTCACTCGACGATGGATGTCAGCGTGCAGGATATGCGGATGGCGCTCTGGTTCTTTGAATATGCGCT GGGGCAGGCAGAAGATATCGCCATTCGTATGCGTCAGTACACCAACGAATATCTCGATAACATTACCCCGCCATTCACTA AAGCCTTGTTTACTTATGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCATATGGGCGGCACCGCGTATCAGAAA AGCCCGGTAGGCTGTCTGTTTTATGATTTTTTCGGCGGTAATACCCTCAAGGCGGACGTCTCTATTTCGGTAACCGAGCT AGGTTCGTTGCTCGACCACACCGGGCCACATCTGGAAGCGGAAGAGTACATCGCACGGACTTTCGGCGCGGAACAGAGTT ATATCGTCACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTAATT GACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTACCGGTCTGGCTAAAACCAACACGTAA TGCGTTGGGGATTTTGGGCGGGATCCCGCGACGAGAATTTACCCGCGACAGTATCGAAGAGAAAGTCGCTGCTACCACGC AGGCACAATGGCCGGTTCATGCGGTGATCACCAACTCAACCTATGATGGCTTGCTCTACAACACCGACTGGATCAAACAG ACGCTGGATGTCCCCTCGATCCACTTCGATTCCGCCTGGGTCCCGTATACTCATTTTCATCCGATCTATCAGGGCAAAAG TGGTATGAGTGGCGATCGGGTGGCAGGAAAAGTTTTCTTCGAAACGCAATCGACCCACAAAATGCTGGCGGCGTTGTCGC AGGCATCACTGATCCACATTAAAGGTGAGTACGACGAAGAGGCGTTTAATGAAGCCTTTATGATGCATACCACCACCTCG CCCAGTTATCCCATTGTTGCTTCGGTTGAGACAGCGGCGGCGATGCTGCGTGGTAATCCGGGCAAACGGCTGATTAACCG TTCAGTAGAACGAGCGCTGCATTTTCGCAAAGAGGTCCAGCGGCTGCGGGAAGAGTCTGACGGCTGGTTTTTCGATATCT GGCAACCGCCGCAGGTGGATGAAGCCGAATGCTGGCCCGTTGCGCCTGGCGAACAGTGGCACGGCTTTAACGATGCGGAT GCCGATCATATGTTTCTCGATCCGGTTAAAGTCACTATTTTGACACCGGGGATGGACGAGCAGGGCAATATGAGCGATGA GGGGATCCCGGCGGCGCTGGTGGCAAAATTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGC TGTTTCTCTTTAGTATTGGCATCGATAAAACCAAAGCAATGGGATTATTGCGTGGGTTGACGGAATTTAAGCGCTCTTAC GATCTCAACCTGCGGATCAAAAATATGCTGCCCGATCTCTATGCAGAAGATCCCGATTTTTATCGCAATATGCGTATTCA GGATCTGGCGCAAGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACTTTGC CGGAGATGATCATGACGCCACATCAGGCATGGCAACGGCAGATTAAAGGCGAAGTAGAAACCATTGCGCTGGAACAACTG GTCGGTAGGGTATCGGCAAATATGATCCTGCCTTATCCACCGGGCGTACCGCTGTTGATGCCTGGAGAAATGCTGACCAA AGAGAGCCGCACAGTACTCGATTTTCTACTGATGCTTTGTTCCGTAGGGCAACATTACCCCGGCTTTGAAACGGATATTC ACGGCGCGAAACAGGACGAAGATGGCGTTTACCGCGTACGAGTCCTAAAAATGGCGGGATAA Protein sequence : MNIIAIMGPHGVFYKDEPIKELESALVAQGFQIIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLY AFINTHSTMDVSVQDMRMALWFFEYALGQAEDIAIRMRQYTNEYLDNITPPFTKALFTYVKERKYTFCTPGHMGGTAYQK SPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPSGSTLLI DRNCHKSLAHLLMMNDVVPVWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQ TLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGDRVAGKVFFETQSTHKMLAALSQASLIHIKGEYDEEAFNEAFMMHTTTS PSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPPQVDEAECWPVAPGEQWHGFNDAD ADHMFLDPVKVTILTPGMDEQGNMSDEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRSY DLNLRIKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKHDLPGLMLRAFDTLPEMIMTPHQAWQRQIKGEVETIALEQL VGRVSANMILPYPPGVPLLMPGEMLTKESRTVLDFLLMLCSVGQHYPGFETDIHGAKQDEDGVYRVRVLKMAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 70 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ldcC | YP_002381432.1 | lysine decarboxylase 2 | VFG1670 | Protein | 0.0 | 61 |
