Gene Information

Name : EFER_2001 (EFER_2001)
Accession : YP_002383127.1
Strain : Escherichia fergusonii ATCC 35469
Genome accession: NC_011740
Putative virulence/resistance : Virulence
Product : multidrug resistance protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 2056507 - 2056842 bp
Length : 336 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt : transporter

DNA sequence : 
TTGCTCATGTTTAATATTGGATTTTTATGGCTGGCACTTTCAATCGGTTCTGAAATAACCGGTACGTCGATGATCAAAAA
AACCAACGGTTTTAGCCGGCTGTGGCCTTCTGTTCTGGTGGTATGTGCTTATTCAATGTGTTATTTCGCCCTGACCAGGG
CAATGAGTACTATTCCGGTTGGTGTTGCCTATTCACTCTGGTGCGGCTTTGGGATTGTCGGCGTGACAATTTTCTCGATG
ATTCTGTATAAACAAAAGCCCGATTTACCCGCCATTTTTGCCATGCTGCTGATTATTAGTGGCGGCATTATTATGAATGT
ATTCTCAGGTATGTAA

Protein sequence : 
MLMFNIGFLWLALSIGSEITGTSMIKKTNGFSRLWPSVLVVCAYSMCYFALTRAMSTIPVGVAYSLWCGFGIVGVTIFSM
ILYKQKPDLPAIFAMLLIISGGIIMNVFSGM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42067.1 hypothetical protein Not tested PAI II 536 Protein 2e-44 97
unnamed CAD42068.1 hypothetical protein Not tested PAI II 536 Protein 2e-15 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EFER_2001 YP_002383127.1 multidrug resistance protein BAC0324 Protein 4e-13 45
EFER_2001 YP_002383127.1 multidrug resistance protein CP004022.1.gene1549. Protein 2e-17 44
EFER_2001 YP_002383127.1 multidrug resistance protein BAC0377 Protein 2e-18 41
EFER_2001 YP_002383127.1 multidrug resistance protein BAC0150 Protein 1e-13 41
EFER_2001 YP_002383127.1 multidrug resistance protein CP001138.1.gene1489. Protein 4e-12 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EFER_2001 YP_002383127.1 multidrug resistance protein VFG1586 Protein 9e-45 97
EFER_2001 YP_002383127.1 multidrug resistance protein VFG1587 Protein 8e-16 44