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Name : lysU (EFER_1898) Accession : YP_002383029.1 Strain : Escherichia fergusonii ATCC 35469 Genome accession: NC_011740 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1940790 - 1942307 bp Length : 1518 bp Strand : - Note : class II; inducible; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; induced by high temperature, anaerobiosis, and l DNA sequence : ATGTCTGAACGAGAAGCACAGGGTGCCAATGAGGCAATTGATCTTAATGATGAACTGAGAAATCGTCGCGAAAAACTGGC GGCGCTGCGTCAACAAGGCGTAGCTTTTCCAAATGATTTTCGCCGCGACTCTACCTCTGACCAGCTGCACGCTGAATATG ATGAAAAGGATAATCAGGAACTTGAATCCTTAAACATTGAAGTTTCGGTTGCTGGTCGAATGATGACCCGTCGCATCATG GGGAAAGCTTCCTTTGTAACGTTGCAGGATGTCGGAGGACGTATTCAACTGTATGTTGCGCGGGATAGCCTGCCAGAAGG TGTTTATAACGATCAGTTTAAAAAATGGGATCTGGGGGACATTATCGGTGCCCGCGGTACGCTGTTTAAGACGCAAACCG GTGAACTTTCCATTCACTGTACTGAGTTACGTCTGCTGACTAAGGCACTGCGTCCATTGCCGGATAAATTCCATGGTCTG CAAGACCAGGAAGTACGTTATCGCCAGCGTTATCTGGATCTGATCGCGAACGATAAATCACGCCAAACTTTTGTCGTACG CTCAAAAATTCTGGCGGCTATCCGCAAATTCATGGTCGCCCGTGGGTTTATGGAAGTAGAAACCCCGATGATGCAGGTCA TCCCGGGTGGGGCATCTGCTCGTCCGTTTATTACCCATCACAATGCCCTTGATTTGGATATGTACCTGCGTATTGCGCCG GAGTTGTATCTGAAACGTCTGGTTGTTGGTGGTTTTGAACGGGTATTCGAAATCAACCGTAACTTCCGTAATGAAGGTAT TTCTGTTCGCCATAATCCAGAGTTCACGATGATGGAGCTCTACATGGCGTATGCGGATTATCACGATTTGATTGAGCTTA CGGAGTCGCTGTTCCGTACCCTGGCACAGGATGTACTGGGTACCACTAAAGTCACTTATGGTGAGCATGTGTTTGATTTT GGCAAACCGTTTGAAAAACTCACCATGCGCGAGGCAATTAAAAAATATCGCCCGGAAACCGATATGGCCGACCTGGATGA TTTTGATGCCGCTAAAGCATTAGCTGAATCTATCGGTATTACGGTAGAGAAAAGCTGGGGGCTGGGGCGTATCGTCACGG AGATCTTTGACGAAGTGGCAGAAGCACATCTGATTCAGCCAACCTTTATTACGGAGTATCCGGCAGAAGTATCGCCGCTG GCGCGCCGTAATGATGTTAACCCGGAAATTACCGACCGTTTTGAATTCTTCATCGGTGGTCGTGAAATCGGTAATGGTTT TAGCGAATTAAATGACGCAGAAGATCAGGCCGAACGTTTCCAGGAACAGGTTAATGCTAAGGCCGCAGGTGATGACGAAG CCATGTTCTACGACGAAGATTACGTTACTGCGCTGGAATATGGTCTGCCGCCAACCGCGGGCCTGGGGATTGGTATCGAC CGAATGATTATGCTGTTTACTAACAGTCATACTATTCGCGACGTTATTCTTTTCCCGGCAATGCGCCCACAGAAATAA Protein sequence : MSEREAQGANEAIDLNDELRNRREKLAALRQQGVAFPNDFRRDSTSDQLHAEYDEKDNQELESLNIEVSVAGRMMTRRIM GKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGL QDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRKFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAP ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQDVLGTTKVTYGEHVFDF GKPFEKLTMREAIKKYRPETDMADLDDFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPL ARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGID RMIMLFTNSHTIRDVILFPAMRPQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-169 | 70 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 7e-90 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysU | YP_002383029.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-169 | 70 |
