Gene Information

Name : PCC7424_4628 (PCC7424_4628)
Accession : YP_002379858.1
Strain : Cyanothece sp. PCC 7424
Genome accession: NC_011729
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5133748 - 5134422 bp
Length : 675 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ava:Ava_4085 two component transcriptional regulator

DNA sequence : 
ATGCGAATTCTCCTAGTTGAAGACGACGAACGAATTGCGAAAGCCTTGGGAGAAACCCTTAAAGATCGACAATATGTCGT
AGATTTAGCCTTTGATGGAGAACAGGGCTGGGATTTTATACAAAGCTTTTCCTATGATTTAATTATCCTCGATGTCATGT
TACCCAAACTGAACGGAGTCGATCTTTGTCAACGGTTGCGATCGGCAGGACAGATGACACCGGTTTTGATGTTAACCGCT
AGAGATACCAGTAGCGATAAAGTCAAGGGATTAGATGCCGGAGCCGATGATTATGTGGTAAAACCCTTTGATTTACCGGA
ATTAACCGCCAGAATTCGGGCTTTATTGCGACGAGGAAATACGGCGTTACCACCTGTATTAGAGTGGGAAAACTTACGCC
TTGATCCCAATACAAAAGAAGTGACTTATGCCGGAAAACCTCTACATTTAACCCCAAAAGAATACGGGTTATTAGAATTA
TTTCTGCGTAATAGTCACATGGTTCTCAATCGAGGTCAAATATTAGAACATCTTTGGTCTTTTGAAGATCCTCCTAGTGA
AGAAGCCGTCAAAGTTCATATTAAAGAATTACGAAAAAAACTCAGATCAGTAGGAGCATCCCCAGACTCAATTGAAACCG
TTTATGGCTTAGGTTATCGGCTCAAACAATTATGA

Protein sequence : 
MRILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWDFIQSFSYDLIILDVMLPKLNGVDLCQRLRSAGQMTPVLMLTA
RDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRRGNTALPPVLEWENLRLDPNTKEVTYAGKPLHLTPKEYGLLEL
FLRNSHMVLNRGQILEHLWSFEDPPSEEAVKVHIKELRKKLRSVGASPDSIETVYGLGYRLKQL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator BAC0347 Protein 1e-32 44
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 7e-38 43
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 7e-38 43
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 7e-38 43
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 7e-38 43
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 7e-38 43
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 7e-38 43
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 7e-38 43
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 7e-38 43
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator BAC0111 Protein 8e-37 43
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator BAC0308 Protein 7e-35 43
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator BAC0197 Protein 4e-33 43
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 5e-33 42
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator BAC0083 Protein 2e-34 41
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator BAC0638 Protein 3e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator VFG1390 Protein 1e-41 45
PCC7424_4628 YP_002379858.1 winged helix family two component transcriptional regulator VFG0596 Protein 5e-30 41