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Name : lysS (PCC7424_0345) Accession : YP_002375681.1 Strain : Cyanothece sp. PCC 7424 Genome accession: NC_011729 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 381699 - 383420 bp Length : 1722 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCATCTAATCAATCCCAACCCCAACCCCAATCCGGCTCTTCACTCGAAGAAATTCGCGCTACACGCCTTGAGAAAGT TGAACAACTCAAACAACTGGGATTGAATCCTTATGAGTATAAATGGGAATCAACCCACCATGCAGCCGAATTACAGGAAA AATACGCGGATTTAGAAAATGGCGAAGAAATAGACTTAGAAGTATCGATCGCTGGTCGTATTATAGCCCGTCGGGTGTTT GGTAAATTAGCCTTTTTTAACCTCCAAGATGAAACCGGAACCATACAGTTATATTTAGAGAAAAAGAGAATTAGTCAAAC GATGGCAGATGTTGCCAATGCCTTTAATACTGTCCTCAAATTAACCGATACGGGGGATATTTTAGGAGCAAAAGGAACAA TTAAACGGACAGAAAAAGGGGAACTCTCCATTTATGTGACTGAGTATGCTATTCTGACTAAAACTTTATTACCCTTACCC GATAAATTTCACGGATTAACGGATATAGAAAAACGCTATCGTCAGCGTTATGTAGATTTAATTATTAATCCGGAAGTGCG AGAAACCTTTCGTCGTCGCGCCCAAATTACGGCATCCATTCGTCGTTATTTAGAACAAGAAGGATTTTTAGAAATTGAAA CCCCAGTCTTACAAAGTGAAGCCGGGGGGGCAGATGCTCGTCCTTTTATTACCTATCACAATACCTTAGAGATGGATTTA TATCTCCGCATTGCCACCGAATTACATTTAAAACGGTTAATTGTGGGCGGGTTTGAAAAAGTCTTTGAGATGGGCAGAAT TTTTAGGAATGAAGGGGTTTCTACTCGTCACAATCCCGAATTTACCTCGATCGAAATCTATCAGGCTTATGCAGATTATC ATGATATGATGGTCTTAACGGAAAACATTATCACCACAGCCGCTAAAGATGTTGTCGGGACTTTAAAGATTACTTATCAA GAGGAAGAAATAGATTTAACACCTCCTTGGCGACGGGTAACTATGCACGAATTAGTCGAGGAAAAAACCGGCTTAGATTT GAATAAATTTAAAACCTTTGAGGAAGCAAGAACCGCAGCGAAAAAAGCCGGGATAGACGTTCCTGAAGACTGTAAAACTC TCGGAAAATTGCTCAATGAAGCCTTTGAACAAAAAGTAGAAGAAAGTTTAATTCAGCCCACTTTTGTGTTAGATTTTCCC GTAGAAATTTCCCCCCTAGCTAAACCTCATCGCTCTAAATCTGGGTTAGTAGAACGATTTGAATTATATATTGTCGGACG GGAATTAGCGAATAGTTTTTCTGAGTTAACCGATCCGATCGATCAACGGAAAAGATTAGAAGCACAAGCAGAGAAAAAAG CAGCCGGAGATTTAGAGGCGCATGGAGTTGATGAAGATTTCTTAACCGCTTTAGAGTATGGAATGCCTCCTACCGGTGGG TTAGGAATAGGGATCGATCGCTTGATTATGTTGTTGACAAATTCTCCGAGTATTCGAGATGTGATTGCTTTCCCTTTACT GAAGAGTCAAAGTGCAGCGTTAAAAGGATTTGATTATGATCCAGATAAACAAATTTTGAGAATTGAGTTTATTAATGGCA GTGTTTATAAGTATCTTGATGTTCCTAAATCTATTTATCAGGAATTAGAAAAAGCTCCCTCAAAAGGTCAGTTTTTTAAC GCTCAAATTCGAGATAAGTTTGGGTTCGATCGGGAAATTTAA Protein sequence : MSSNQSQPQPQSGSSLEEIRATRLEKVEQLKQLGLNPYEYKWESTHHAAELQEKYADLENGEEIDLEVSIAGRIIARRVF GKLAFFNLQDETGTIQLYLEKKRISQTMADVANAFNTVLKLTDTGDILGAKGTIKRTEKGELSIYVTEYAILTKTLLPLP DKFHGLTDIEKRYRQRYVDLIINPEVRETFRRRAQITASIRRYLEQEGFLEIETPVLQSEAGGADARPFITYHNTLEMDL YLRIATELHLKRLIVGGFEKVFEMGRIFRNEGVSTRHNPEFTSIEIYQAYADYHDMMVLTENIITTAAKDVVGTLKITYQ EEEIDLTPPWRRVTMHELVEEKTGLDLNKFKTFEEARTAAKKAGIDVPEDCKTLGKLLNEAFEQKVEESLIQPTFVLDFP VEISPLAKPHRSKSGLVERFELYIVGRELANSFSELTDPIDQRKRLEAQAEKKAAGDLEAHGVDEDFLTALEYGMPPTGG LGIGIDRLIMLLTNSPSIRDVIAFPLLKSQSAALKGFDYDPDKQILRIEFINGSVYKYLDVPKSIYQELEKAPSKGQFFN AQIRDKFGFDREI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-106 | 49 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-85 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002375681.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 7e-107 | 49 |
