Gene Information

Name : PCC7424_2845 (PCC7424_2845)
Accession : YP_002378118.1
Strain : Cyanothece sp. PCC 7424
Genome accession: NC_011729
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3163748 - 3164452 bp
Length : 705 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mar:MAE_48220 two-component response regulator OmpR subfamily

DNA sequence : 
ATGAATATTCTTATTGTGGAAGATGAACCAGAAATTGCTCAACTGATTCGAGAAACTCTAGAGAGAGAAAATTTTTCCTG
TCAAATTGCTAAAAGTGGGACACAAGCTTTAGAGATTTTCGGACAATTACAGCCGGATCTGATTATTTTAGATTTGATGT
TACCGGGTTTAGATGGGTTAGAAGTCTGTACTCGAATTCGTCAAAAACCCGGCGCAAAAGATCCCTATATTTTAATGTTA
ACTGCCAGAGGAGAAGAAATAGACCGCATTATTGGATTATCCACCGGAGCAGATGATTACCTCGTAAAACCCTTTAGTCC
GATTGAATTAGTCGCAAGAGTTAGAGCTTTACTGCGGAGGAGTTTACGTCATGGGGGACAAGTTCAACAAATTTATCGAA
CCAGTCATTTTACGGTTGATTTAGATCAGCATATTGCCACTCGTCAGCTAGACAATGAAGATTCAGAAATTTTAGATTTA
ACGACTCTAGAATTTAATTTACTTTCAACCTTTATGAGTTATCCTGGAAGAGTCTGGAGTCGAACTCAGTTAATTGATAA
GCTTTGGGGAAATGATTTTTTTGGGGATGAAAGAGTCGTTGATACTCATATTCGACGATTACGCAAAAAAGTAGAACCCG
ATCCGGCTAATCCCAGTTTTATTAAAACGGTTATTGGGGTAGGGTATAAATTTGAAGATGACTAA

Protein sequence : 
MNILIVEDEPEIAQLIRETLERENFSCQIAKSGTQALEIFGQLQPDLIILDLMLPGLDGLEVCTRIRQKPGAKDPYILML
TARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRRSLRHGGQVQQIYRTSHFTVDLDQHIATRQLDNEDSEILDL
TTLEFNLLSTFMSYPGRVWSRTQLIDKLWGNDFFGDERVVDTHIRRLRKKVEPDPANPSFIKTVIGVGYKFEDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-25 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 4e-29 44
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 6e-34 44
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator CP001918.1.gene3444. Protein 9e-31 44
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 2e-36 43
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 2e-34 42
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator BAC0125 Protein 6e-26 41
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator NC_014475.1.orf0.gen Protein 5e-29 41
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator NC_005054.2598277.p0 Protein 5e-29 41
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator BAC0197 Protein 7e-26 41
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator CP000034.1.gene2186. Protein 1e-31 41
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator NC_002695.1.916589.p Protein 1e-31 41
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator BAC0596 Protein 6e-31 41
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator BAC0039 Protein 1e-31 41
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator CP001138.1.gene2239. Protein 6e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator VFG1563 Protein 6e-26 41
PCC7424_2845 YP_002378118.1 winged helix family two component transcriptional regulator VFG1702 Protein 6e-26 41