Gene Information

Name : PCC7424_2550 (PCC7424_2550)
Accession : YP_002377834.1
Strain : Cyanothece sp. PCC 7424
Genome accession: NC_011729
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2825473 - 2826375 bp
Length : 903 bp
Strand : -
Note : PFAM: transporter permease; ABC-3 protein; KEGG: ter:Tery_3358 hypothetical protein

DNA sequence :
ATGACTACTATGTTAACTATTTTATTAGAACCCTTACAGTATAGTTTTATGCAGCGCTCCCTCATAGAAGCCATTATTGT
GGGAGTAATTTGTGCGATTGTGGGCAGTTATTTAATGGTGCAACGATTAGCCTTATTAGGAGATGCCATTAGTCACTCGG
TTTTACCGGGTTTAGCGGTTGCCTTTTTATGGGGAATGAATATTTTTGTTGGGGCTTTTATTGCGGGTCTAATTAGCACA
ATTTTAATTAATATAATTCGGACTCGTTCTAATTTAAAAGAAGATGCAGCAATGGGAATCGTCTTCTCTGCATTTTTTGC
GTTAGGTATTACTTTAATTACAATTATCCAAAAAGATAATAAAATTGACCTCAATCATTTTCTCTTTGGCAATATTTTAG
GAGTCACTGTGAGCGATGTGAGAGACACTCTCATTATTGCGGTAATTATCATTTTAATAGTCGTTTTACTGTATAAAGAA
TTACATTTTTATACCTTTGATAGATTGGGGGCGCAAGCTGTGGGTTTACCAGTGCATTTATTAGAGTTAGGATTAATGAT
TTTGATCGGGTTAACGATTGTGGCTAGCCTCAAAACCGTAGGGGTTATCCTAGTTTTATCCCTATTAATTACTCCTGCTG
CAACCGCCTATCTATTAGTTAAACGGCTTCATCAAGTCATGATATTAGGAGTAGGACTTGGAGTTATATCTAGTATTAGT
GGAATGTATTTGAGTTACTTCTATAATTTGCCCTCAGGCCCAGCTATTGTTTTGGTTGCATCCGGGTTATTTGTCTTAGC
ATTTTTATTCAGTCCCAGTCAAGGTATTTTAACTTATCGGGCTTCCGCTTCTAATCAATCTTTATTATGGCAAGAATTGA
AGCGGTTAATCCGTTTTCCCTAA

Protein sequence :
MTTMLTILLEPLQYSFMQRSLIEAIIVGVICAIVGSYLMVQRLALLGDAISHSVLPGLAVAFLWGMNIFVGAFIAGLIST
ILINIIRTRSNLKEDAAMGIVFSAFFALGITLITIIQKDNKIDLNHFLFGNILGVTVSDVRDTLIIAVIIILIVVLLYKE
LHFYTFDRLGAQAVGLPVHLLELGLMILIGLTIVASLKTVGVILVLSLLITPAATAYLLVKRLHQVMILGVGLGVISSIS
GMYLSYFYNLPSGPAIVLVASGLFVLAFLFSPSQGILTYRASASNQSLLWQELKRLIRFP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-32 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-32 43
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-32 43
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 2e-35 42
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 1e-35 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-32 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC7424_2550 YP_002377834.1 ABC transporter BAC0352 Protein 1e-32 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC7424_2550 YP_002377834.1 ABC transporter VFG0528 Protein 1e-32 43