|
Name : Msil_0377 (Msil_0377) Accession : YP_002360715.1 Strain : Methylocella silvestris BL2 Genome accession: NC_011666 Putative virulence/resistance : Unknown Product : deoxyribodipyrimidine photo-lyase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0415 EC number : 4.1.99.3 Position : 414572 - 416032 bp Length : 1461 bp Strand : - Note : PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: hne:HNE_1798 deoxyribodipyrimidine photolyase family protein DNA sequence : ATGGCCGCGCCAAAAACACAAAACACTGCGATTGTCTGGTTCCGCGACGATTTGCGGCTGGCCGACAATGAGGCGCTGGC GGCGGCCCTTTCGACCGGCGGTCCGCTTCTCTGCGTCTATATTCTGGAAGATGGGACGGCCGGCTTTCGTCCCCTGGGGG GCGCCGCGCGCTGGTGGCTGCATCATTCGCTGCAGGCGCTCGGACAGGACATCGCGGCGAAAGGCGGCCGGCTGGATCTT TTTTGCGGCGAGGCGCGAAGAATCCTGCCCGCGCTGGCCGAGGCGGCCGGGGCGCGCATCATTTGCTGGACGCGCCGATA CGGCGGTCCGGAAATGGCGGTCGACGCGGCATTGAAGGCGCAGTTCAAAACCTCCGGCGTCGAGGCGAAGAGCTTTAATG GGCATCTGCTGCACGAGCCCTGGGACATTACGCGCGGCGACGGCCATGGTTTTGCGGTTTATACGCCCTATTGGCGAGCG GCGAGCGCGGCGGCGCAAGTCGGCGAGCCGCTCCCCGCGCCGGACCGTCTTCCGGCCGCGCCCATTCCGCGCGGGGCGCT GCGAACAACGAGCATTGAAGCGCTTGCCCTGTTGCCGGAAAAGCCCGATTGGGCCGGCGGCTTGCGCGCAGCGTGGAGGC CGGGAGAAAATGGCGCGCAGGAACGGCTTAAGGCTTTTCTGGAGGGCGAGATTGCGTCTTACTCGCTTGAGCGAAATAGG CCCAGTGCGGACGCGGTCTCGCGGCTGTCGCCGCATCTGCGTTTTGGCGAGATCGGCCCGCGCCAGATTTTTGCAGCGGT CCGAACAGCCTGGGACAATGCAGCCCAAAAAGGCGGCGTAAAATTTCTTGCCGAACTCGGATGGCGCGAGTTCAACTACC ATCTGTCGTTTTATCATCCCGACGCGGCGCGCCAAAATATCCAGCGCCGCTTTGATAAAATGCCGTGGCGCGAACCGGCG CCGCGAGAGCTCTCCGCCTGGCAGCGCGGCGAGACTGGCTATCCCCTTATCGACGCCGGCATGCGCGAACTCTGGGCCAC GGGCTATATGCACAACCGCGTGCGCATGGTTGTGGCCTCTTTCCTCATCAAGCATCTGTTGATCGACTGGCGCATTGGCG AGAACTGGTTCTGGGACACGCTCTGCGACGCCGACCCCGCCAATAATCCGATGAACTGGCAATGGGTCGCGGGATCGGGC GCAGACGCCGCGCCCTATTTCCGGATCTTCAATCCTGTGCTTCAGGGCGAAAAGTTCGACGCGGCCGGCGACTATGTACG CCGCTGGATTCCAGAGCTGGCGAAACTGCCGAATAAATGGATTCACAAACCCTTCGCAGCGCCGCCGGCCCTGTTGCGCG GGGCTGGAGTAGAGCTAGGTAAAAATTACCCGCGGCCCATCGTCGATCTTGCCGAAGGCCGCGCGCGGGCGTTGGCGGCG TTTGAAAAGGTTAAGGGTTGA Protein sequence : MAAPKTQNTAIVWFRDDLRLADNEALAAALSTGGPLLCVYILEDGTAGFRPLGGAARWWLHHSLQALGQDIAAKGGRLDL FCGEARRILPALAEAAGARIICWTRRYGGPEMAVDAALKAQFKTSGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRA ASAAAQVGEPLPAPDRLPAAPIPRGALRTTSIEALALLPEKPDWAGGLRAAWRPGENGAQERLKAFLEGEIASYSLERNR PSADAVSRLSPHLRFGEIGPRQIFAAVRTAWDNAAQKGGVKFLAELGWREFNYHLSFYHPDAARQNIQRRFDKMPWREPA PRELSAWQRGETGYPLIDAGMRELWATGYMHNRVRMVVASFLIKHLLIDWRIGENWFWDTLCDADPANNPMNWQWVAGSG ADAAPYFRIFNPVLQGEKFDAAGDYVRRWIPELAKLPNKWIHKPFAAPPALLRGAGVELGKNYPRPIVDLAEGRARALAA FEKVKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| DIP0113 | NP_938509.1 | riboflavin biosynthesis protein | Not tested | Not named | Protein | 6e-76 | 43 |
| CD241_0111 | YP_005124380.1 | putative riboflavin biosynthesis protein | Not tested | Not named | Protein | 1e-76 | 43 |
