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Name : Sbal223_1486 (Sbal223_1486) Accession : YP_002357416.1 Strain : Shewanella baltica OS223 Genome accession: NC_011663 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1733279 - 1735219 bp Length : 1941 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sdn:Sden_2645 polysaccharide biosynthesis protein CapD DNA sequence : ATGGAGTTTTTGCAAGGCTTGTTCCGCTTAAAACGTGCTCACAAACGTTTGGTGAGCGTTGTTATTGATTCGGTTTTCCT TTGTTTTGCTTTCTGGGCTGCATTATTGGTTCGAGTTGACGATGTCAACGTACTTGTTAATTGGGCTTATTGGGCATTAC TGTTGCTTGTTGTCCCCTTGAGTGTTGTAGGTTTTGCAAAATTAGGCTTGTATCGAGCCGTATTACGTTACATGGGACTA CAAGCACTCACTGCAATACTGTTTGGTGTTATTGCCTCAACAATAATTCTTGTTATCGTGGCTTATTACTCTGAGGCGCA ATTACCTCGTACAGTGCCTATCATTTACGCTGCTTTTGCCTTAGTTTTTGTTGGAGGGACGCGTGCTATGGTGCGTTCGC TTGTCGGTTCAGGAATGAAGCGGGTTGGTGAGCCGGTAATAATTTATGGCGCTGGGGTGAGTGGTCGCCAATTAGTCACT GCATTAGTTCAGAGTCATGAATATTATCCATTCGCCTTTGTTGATGATGATGAGTCGCTACATGGCATAGTTATCCAAGG TGTTTATGTTCATTCCCCTTCAATTATTAAAAAATTAATCAATCAAAATTCTGCAACTAAAGTTCTTTTGGCTATGCCTA GTGCGCCGCGCTCGCGTCGACAAGAAATTTTATTGCAGCTTGAGCCTTTGGCTGTGCAAGTGCTTACCTTGCCTGCAATG GCTGATTTGGTCAATGGCACCAAACTTTATAGTGATATTAAAGAAGTCGAAATTGATGATTTATTAGGGCGAGATGCAGT AAATCCAAGAGGCGATCTTCTTAGTGCGAATATTCGTAATAAAGTAGTTATGGTAACAGGGGCAGGTGGGTCTATCGGCT CAGAGCTTTGTCGCCAAATACTCAAGCAAAATCCTAAAAAGTTAGTACTCTTTGAACTTTCTGAATATGCCTTATATGCC ATTGAACGTGAATTACGCTTAACGGCGCATGAGTTGGGTTTGGATGTCGAAATTTTCCCCATGATGGGTTCAGTTCAACG TGCTAATCGTATAGAAGCAGTGATGAAGGCTTTTAGTGTACAGACTGTCTATCATGCTGCTGCCTACAAACATGTTCCGT TAGTTGAGCACAATGTGGTTGAAGGTGTTCGTAATAATGTGTTTGGTACCTTGTATACAGCTCAAGCCGCCATTGCTGCG AAGGTTGAAACTTTTGTATTGATTTCTACGGATAAAGCTGTGAGGCCGACCAATATCATGGGAACCACTAAGCGTATGGC TGAGTTGGTTCTGCAAGCATTATCAAATTTAAATAATAATACTCGTTTTTGTATGGTTCGTTTTGGTAATGTTTTAGGCT CATCGGGTTCAGTAGTGCCTTTGTTCAGAAGCCAAATTGCCAACGGTGGTCCGGTAACAGTCACTCACCCTGAAATCACT CGTTTTTTTATGACAATACCAGAGGCTTCTCAATTAGTGATCCAAGCCGGTGCTATGGGTAAAGGCGGTGATGTATTTGT GCTGGATATGGGCAAATCGGTTAAAATCGTCGATTTGGCTGCAAAAATGATCCGTCTAAGTGGATTTGAAGTTAAGGATG AAAAAAATCCTGATGGTGATATTGCGATTGAGTTTAGTGGTTTACGTCCTGGTGAAAAGTTATATGAGGAATTGCTGATT GGTGATGATGTTACTGGTACTGAGCATGAGCGCATTATGACTGCAAATGAAATATGTTTGCCTTGGAATGAGCTCGAAAC TATTCTTTATAGACTAGATAAAGCCTGTCATGAATTCAATCATGAGGTTATCCGCGACATTTTGCTAACAACGCCAACAG GATTTAATCCTACAGATGGAATTTGTGATCTAGTTTGGTTGCAAAAGAAATCAATCACCGCAGTTGAAGATAAAAATAAA GTCGTTACTTTAGTTTCTTAG Protein sequence : MEFLQGLFRLKRAHKRLVSVVIDSVFLCFAFWAALLVRVDDVNVLVNWAYWALLLLVVPLSVVGFAKLGLYRAVLRYMGL QALTAILFGVIASTIILVIVAYYSEAQLPRTVPIIYAAFALVFVGGTRAMVRSLVGSGMKRVGEPVIIYGAGVSGRQLVT ALVQSHEYYPFAFVDDDESLHGIVIQGVYVHSPSIIKKLINQNSATKVLLAMPSAPRSRRQEILLQLEPLAVQVLTLPAM ADLVNGTKLYSDIKEVEIDDLLGRDAVNPRGDLLSANIRNKVVMVTGAGGSIGSELCRQILKQNPKKLVLFELSEYALYA IERELRLTAHELGLDVEIFPMMGSVQRANRIEAVMKAFSVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIAA KVETFVLISTDKAVRPTNIMGTTKRMAELVLQALSNLNNNTRFCMVRFGNVLGSSGSVVPLFRSQIANGGPVTVTHPEIT RFFMTIPEASQLVIQAGAMGKGGDVFVLDMGKSVKIVDLAAKMIRLSGFEVKDEKNPDGDIAIEFSGLRPGEKLYEELLI GDDVTGTEHERIMTANEICLPWNELETILYRLDKACHEFNHEVIRDILLTTPTGFNPTDGICDLVWLQKKSITAVEDKNK VVTLVS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-79 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sbal223_1486 | YP_002357416.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 3e-124 | 53 |
| Sbal223_1486 | YP_002357416.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 6e-82 | 46 |
