Gene Information

Name : fliP (Sbal223_1447)
Accession : YP_002357377.1
Strain : Shewanella baltica OS223
Genome accession: NC_011663
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1689470 - 1690216 bp
Length : 747 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
ATGACAACACGTATGCTCGCGTTAGTTGGCTTAGTTATTCTGTTATGTATGCCGTCGGCATGGGCTGCCGATGGTGTTTT
GCCTGCGGTTACTGTAACAACAGGACCTGACGGTTCCACAGAATACTCGGTCACAATGCAGATTTTACTGTTGATGACAT
CGCTGAGTTTTTTACCTGCGATGCTCATTATGTTGACCTCTTTCACGCGTATTATCATAGTCCTGTCAATATTACGTCAA
GCCATTGGGTTACAACAGACGCCGTCTAATCAAGTCTTAATTGGTATGAGTTTATTCATGACCTTCTTTATTATGGCGCC
GGTGTTTGACCGGATTTATGACGAAGGAGTTAAGCCTTACATAGAAGAGCAGTTAACCTTGCAGCAAGCGTTTGAAAAAG
GCAAAGAGCCACTCAAAGGTTTTATGTTAGGGCAAGTCAGGACCACAGACTTAAAAACTTTTATCGAAATTTCAGGCTAT
AAGAACATTAAGTCGCCCGAAGAAGCCCCGATGAGTGTGTTGATCCCCGCCTTTATTACCAGTGAGTTGAAAACAGCTTT
TCAAATTGGCTTTATGTTGTTCGTGCCATTTTTAGTGTTAGATCTTGTTGTGGCCAGTATCTTAATGGCCATGGGTATGA
TGATGTTATCCCCTATGATAGTGTCGCTACCGTTTAAGATCATGCTGTTTGTGCTCGTCGATGGTTGGAGCTTAGTCCTA
GGGACATTAGCGAATAGTTTCGGGTAG

Protein sequence :
MTTRMLALVGLVILLCMPSAWAADGVLPAVTVTTGPDGSTEYSVTMQILLLMTSLSFLPAMLIMLTSFTRIIIVLSILRQ
AIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQLTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGY
KNIKSPEEAPMSVLIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVL
GTLANSFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-13 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-13 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-13 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-15 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-16 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 6e-15 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-14 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 8e-15 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 8e-15 41
escR AAC31528.1 L0049 Virulence LEE Protein 6e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002357377.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-56 65
fliP YP_002357377.1 flagellar biosynthesis protein FliP VFG2016 Protein 4e-51 63
fliP YP_002357377.1 flagellar biosynthesis protein FliP VFG2494 Protein 7e-53 60
fliP YP_002357377.1 flagellar biosynthesis protein FliP VFG2338 Protein 5e-47 53
fliP YP_002357377.1 flagellar biosynthesis protein FliP VFG0827 Protein 3e-15 41