Gene Information

Name : Tmz1t_3288 (Tmz1t_3288)
Accession : YP_002890260.1
Strain : Thauera sp. MZ1T
Genome accession: NC_011662
Putative virulence/resistance : Virulence
Product : two component sigma-54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3603927 - 3605318 bp
Length : 1392 bp
Strand : -
Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: azo:azo3356 two component system response regulator

DNA sequence : 
ATGACCCAGGTCGACCGCCGCAACCGGCCCCGTGCCGCCGACGTCCTCGTCGTCGATGACGAGGACGACATCCGGGAACT
GCTCGAGCTCTCGCTGATGCGCATGGGACTGGCCTGCGACACGGCGGGCTCGGTGGGCGCGGCGCGTGCGCTGCTGGCCG
AGCGCAGCTACCGGCTGTGCCTGACCGACATGCGCCTGCCCGACGGCGACGGGCTGGAGCTGGTCGAGTACATCCAGACG
CTGCGGCCGGGCCTGCCGGTGGCGGTGATCACCGCCTTCGGCAGCATCGAGACCGCGATCCGCGCGCTCAAGCTGGGTGC
CTTCGACTTCGTCACCAAGCCGGTCGAGCTCAAGGCCTTGCGCGAACTCGTGCAGCACGCGCTCAAGCTGCACGCGGTGG
AGCCGGTCGAGCATGGTGCGGCGTCGGCGGAGCGCAGCCTGATCGGCCACTCGGCGGCCTTCGTGCAGCTGCGCGCCCAG
GCCGGGAAGCTTGCGCGCAACCAGGCGCCGGTGTTCATCCATGGTGAGTCCGGGACCGGCAAGGAGGTGATTGCGCGCTA
CATCCACGCGCTCGGTGCGCGCGCCGCCGGCCCCTTCGTGCCGGTCAACTGCGGGGCGATCTCGCCCGAGCTGATGGAGA
GCGAGTTCTTCGGTCATCGCAAGGGCAGCTTCACTGGCGCCACCGCGGACAAGAGCGGGCTGTTTCAGGCCGCGGGCGGC
GGCACCCTGTTCCTCGACGAGATCGGCGAACTGCCGTTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGCGC
GGTGCGCCCGGTGGGTGCGCATGCCGAGGAGCCGGTGGATGTGCGCATCCTCTCCGCGTCGCACCAGGATCTCGGCCGCC
TGGTGGCCGAGGGGCGCTTCCGCCAGGACCTGTTCTTCCGCATCAACGTGATCACCTTGCGCGTGCCGCCGTTGCGCGAG
CGCCGCGAGGACATCCCCGACCTGGCCGCCCACATCCTCGCCCGCCTCGCCGTGCGCGAGGGTGGGGCGCCGCGCCGGCT
TTCCGCGGCGGCGCTCGAGGCGCTGCAGGCCTACGCTTTCCCCGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAGCGCG
CCTGTGCGCTGTGCGAGGGTGAGGAGATCGGTGCCGGCGACCTCGGGGTGGAGGACGATTGCGGCGCGCTCGCGGCGCCG
GGGGGGGGCGAGAATGGTGCATCGCCGGCGACCGAGGCCGAAGTGGCCGGCGAGGGCCGGGATGAGGTCGAGCGCCTGCG
CATCATCCGCGCGCTCGAGCAGACGCGCTGGAACCGGTCGGCGGCCGCGCGCAACCTCGGCATGACCTTGCGTCAGCTGC
GCTACCGTTTGCAGAAGTGGGGAATGGACTAG

Protein sequence : 
MTQVDRRNRPRAADVLVVDDEDDIRELLELSLMRMGLACDTAGSVGAARALLAERSYRLCLTDMRLPDGDGLELVEYIQT
LRPGLPVAVITAFGSIETAIRALKLGAFDFVTKPVELKALRELVQHALKLHAVEPVEHGAASAERSLIGHSAAFVQLRAQ
AGKLARNQAPVFIHGESGTGKEVIARYIHALGARAAGPFVPVNCGAISPELMESEFFGHRKGSFTGATADKSGLFQAAGG
GTLFLDEIGELPLAMQVKLLRAIQERAVRPVGAHAEEPVDVRILSASHQDLGRLVAEGRFRQDLFFRINVITLRVPPLRE
RREDIPDLAAHILARLAVREGGAPRRLSAAALEALQAYAFPGNVRELENLLERACALCEGEEIGAGDLGVEDDCGALAAP
GGGENGASPATEAEVAGEGRDEVERLRIIRALEQTRWNRSAAARNLGMTLRQLRYRLQKWGMD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 5e-94 49
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 5e-94 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmz1t_3288 YP_002890260.1 two component sigma-54 specific Fis family transcriptional regulator BAC0467 Protein 4e-69 43
Tmz1t_3288 YP_002890260.1 two component sigma-54 specific Fis family transcriptional regulator BAC0089 Protein 5e-58 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmz1t_3288 YP_002890260.1 two component sigma-54 specific Fis family transcriptional regulator VFG1214 Protein 8e-118 60
Tmz1t_3288 YP_002890260.1 two component sigma-54 specific Fis family transcriptional regulator VFG0116 Protein 7e-57 43