Gene Information

Name : Tmz1t_1222 (Tmz1t_1222)
Accession : YP_002354877.1
Strain : Thauera sp. MZ1T
Genome accession: NC_011662
Putative virulence/resistance : Virulence
Product : two component sigma-54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1356149 - 1357576 bp
Length : 1428 bp
Strand : -
Note : PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: eba:ebA966 two-component transcriptional regulator

DNA sequence : 
ATGAGCACGTCGACGGAGATGCACGCGACCGCGGCGGCGGCACCGGCGCGCCTGCTGGTGGTCGACGACGACGCCGACCT
GCTGCGCCTGCTCGCGATGCGCCTGCAGGCCACCGGCTACGACGTCGCCACCGCGGACAGCGTCGCGGCCGCACGCAGCC
GTCTCGGCGTGGAGCGCTTCGACCTCGTGGTGAGCGACGTGCGCCTGCCCGACGGCGACGGACTCGCCCTGTTCGAGGAC
ATCCGCCGCCAGCATCCGGCGCTGCCGGTCATCCTGCTCACCGCGCACGGCACCATCCCCGATGCGGTCGAGGCCACCGC
GCTCGGGGTCGCCGGTTATCTCACCAAGCCCTTCGACAGCCAGGCCCTGCTGCAGGGCATCCGCCAGGCCCTGCAACGCG
CCGGCCCCACCCACGCCCGCAGCGGTCTCCGCGCCGACGCCCCCGGCAGCGCCGGCGACACGGCCTGGCGCGCAGCGATC
CTCAGCCGCAGCAGCCGCATGCAGGCAGTCCTCGACGAGGCCCGTCTGGTCGCCGCCGCGGACGCCAGCGTGCTGATCCG
CGGTGACAGCGGCACCGGCAAGGAGCTGCTCGCACGCGCGATCCACCTCGCCAGCCCGCGCGCCGCTGCGCCCTTCGTCG
CGATCAACTGCGGCGCCATTCCCGAGCCGCTGCTCGAATCCGAGCTCTTCGGCCACGTGCGCGGCGCCTTCACCGGCGCC
ACCAGCGCCCATCAGGGCCTGGTGCAGGCCGCCCACGGCGGCACACTCTTCCTCGACGAGATCGGCGACATGCCGCCCGC
GCTGCAGGTCAAGCTGCTGCGCGTGCTGCAGGAGCGCGCCGTGCGTCCGGTGGGTGCGACGCGCGCGCAGGCGGTCGACC
TGCGCATCGTCTCCGCCACCCACCGCGACCTCGACGCGGCGCTGGCCGCGGGCCAGTTCCGCGCGGACCTCTACTACCGC
ATCGACGTGGTGAGCCTGCAGCTGCCCACCCTGGCCGAGCGCCGCGAGGACATCCCGCTGCTCGCCGGGCACTTCCTGCG
CAGCCTCGCGCACAAGTACGGCAGGCGCCTCACCGGCTTCGCGCCCGAAGCGCTGGAGGCACTCGCCACCGCGCCGTGGC
CGGGCAACGTGCGCCAGCTCCACAACGTGGTCGAGCAGGCGTGCGCGCTCGCCACCACGGCGCTGATCCCGCGCGCCCTG
GTCGAACGCGCCCTGCGCGTGCAGCCGGCCGAGGCCCTCGGCTACGCCGAGGCGAAGCGCCGCTTCGAGCGAAACTATCT
GATACAGCTGCTGAAACTGACTGCGGGTAATGTTTCGGACGCTGCACGGCTGGCGGAGCGCAATCGCACCGAGTTCTACC
GCCTGCTGCAGCGGCACGACCTGACGCCCGAGCTCTTCCGCGGCGCCGGCCCCGATGTCGAACAATGA

Protein sequence : 
MSTSTEMHATAAAAPARLLVVDDDADLLRLLAMRLQATGYDVATADSVAAARSRLGVERFDLVVSDVRLPDGDGLALFED
IRRQHPALPVILLTAHGTIPDAVEATALGVAGYLTKPFDSQALLQGIRQALQRAGPTHARSGLRADAPGSAGDTAWRAAI
LSRSSRMQAVLDEARLVAAADASVLIRGDSGTGKELLARAIHLASPRAAAPFVAINCGAIPEPLLESELFGHVRGAFTGA
TSAHQGLVQAAHGGTLFLDEIGDMPPALQVKLLRVLQERAVRPVGATRAQAVDLRIVSATHRDLDAALAAGQFRADLYYR
IDVVSLQLPTLAERREDIPLLAGHFLRSLAHKYGRRLTGFAPEALEALATAPWPGNVRQLHNVVEQACALATTALIPRAL
VERALRVQPAEALGYAEAKRRFERNYLIQLLKLTAGNVSDAARLAERNRTEFYRLLQRHDLTPELFRGAGPDVEQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 9e-57 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 9e-57 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmz1t_1222 YP_002354877.1 two component sigma-54 specific Fis family transcriptional regulator BAC0467 Protein 2e-75 45
Tmz1t_1222 YP_002354877.1 two component sigma-54 specific Fis family transcriptional regulator BAC0089 Protein 2e-78 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmz1t_1222 YP_002354877.1 two component sigma-54 specific Fis family transcriptional regulator VFG1214 Protein 3e-65 47
Tmz1t_1222 YP_002354877.1 two component sigma-54 specific Fis family transcriptional regulator VFG1249 Protein 9e-62 47
Tmz1t_1222 YP_002354877.1 two component sigma-54 specific Fis family transcriptional regulator VFG0116 Protein 1e-61 46