Gene Information

Name : LMHCC_0887 (LMHCC_0887)
Accession : YP_002349850.1
Strain : Listeria monocytogenes HCC23
Genome accession: NC_011660
Putative virulence/resistance : Resistance
Product : cystathionine beta-lyase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 908537 - 909709 bp
Length : 1173 bp
Strand : +
Note : catalyzes the formation of L-homocysteine from cystathionine

DNA sequence :
GTGGCTAATGAATATGCGCAAGATACGGCTGTGATTAAAGCGAGCCTCGGGATTGATAAAGAGACAGGTGCGCTTAATAC
GCCAATTCATTTATCGTCTACTTTCCATCAGCATGACTTTGATAATTATCACGCTTATGATTATGCGAGAAGTGGGAACC
CAACGAGAGAAAAAGTGGAACAAGCGATTGCGGAACTGGAAGGTGGTACGAATGGTTTTGCCTTTGCTAGTGGGATGGCG
GCTGTTTCTGCGGCGCTCTTTACTCTTTCTAAGGGAGATCATTTTATCATTGCGAAAGATGTGTACGGCGGGACATTTCG
TTTGGTGGAGCAAGTGTTGCCGCGGTTTGGGATTACGCATACTTTTGTTGATACGACAAATATTGACGAAGTTGCGAAGG
CATTTCAAGCGAATACGAAATTGGTTTACTTGGAAACACCTTCTAATCCGTTGTTGCATGTGACAGATATTCGGACGGTT
GCCAAACTTGCGAAAGCGAATGGGTGTTATACGTTTGTGGATAATACATTTTTGACGCCACTAATTCAAAAACCGTTAGA
TTTGGGTGCGGACTTGGTTATCCACAGTGCGACGAAGTTTCTTGGCGGACATAGCGATATTTTGGCGGGGCTAATTGTCA
CAAATAATCCTAGTTTGGCCGAAGCCGTTTACTTTTTGCAAAATTCGACTGGTGGGGTTCTTGGTGTGCAGGATTCGTGG
TTGTTGTTGCGAGGACTTAAAACACTTTCTGTCCGGATGAAAGCTGGGACGGAGACGGCGGAGAAAATTGCGCTATTTTT
AAATGCCGAACCAGATGTGGTGGCAGTGCATTATCCGGGGCTACCTTCTCATGCGGGTTATGACATTCAAGTGGAACAGG
CGACAAGTGGCGGGGCTGTCTTATCGTTTGATCTTGGTAGTGAAGAAGCGGCGCGAGAACTAGTTACACATTTGGAATTG
CCAGTGTTCTCTGTGAGTCTAGGTGCGGTTGAAAGCATTCTTTCTTACCCAGCTAAAATGTCTCATGCGGCTGTTCCGGA
AGAGGAGCGTTTGGCGCAAGGAATTACGCCAGGATTATTACGTTTTTCAGCTGGACTGGAAGATGCCGATGATTTGATTG
CTGATTTAAAACAAGCACTTTCTTTCATTAAGAAGGGAAGTGTTGCGAAATGA

Protein sequence :
MANEYAQDTAVIKASLGIDKETGALNTPIHLSSTFHQHDFDNYHAYDYARSGNPTREKVEQAIAELEGGTNGFAFASGMA
AVSAALFTLSKGDHFIIAKDVYGGTFRLVEQVLPRFGITHTFVDTTNIDEVAKAFQANTKLVYLETPSNPLLHVTDIRTV
AKLAKANGCYTFVDNTFLTPLIQKPLDLGADLVIHSATKFLGGHSDILAGLIVTNNPSLAEAVYFLQNSTGGVLGVQDSW
LLLRGLKTLSVRMKAGTETAEKIALFLNAEPDVVAVHYPGLPSHAGYDIQVEQATSGGAVLSFDLGSEEAARELVTHLEL
PVFSVSLGAVESILSYPAKMSHAAVPEEERLAQGITPGLLRFSAGLEDADDLIADLKQALSFIKKGSVAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 3e-75 49
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 2e-76 49
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 3e-75 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMHCC_0887 YP_002349850.1 cystathionine beta-lyase BAC0207 Protein 6e-55 43