Gene Information

Name : LMHCC_0596 (LMHCC_0596)
Accession : YP_002349566.1
Strain : Listeria monocytogenes HCC23
Genome accession: NC_011660
Putative virulence/resistance : Virulence
Product : ferric enterobactin transport ATP-binding protein FepC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 607474 - 608298 bp
Length : 825 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAGACCTTCATACTGATAACTTACAAATTTCATACGACAAACGAATCATTGTTGATGGTTTAGATATAGCCATTCC
AGCTAATAAAATAACCGCTTTAGTAGGTGCAAACGGCTCAGGGAAATCGACTATTTTAAAAACGATGTCCCGCTTAATGA
AACCTAGCAAGGGCGCTGTTTACTTAGATGGCAAAAGTATTCATAATGAATCAACGAGAGAGATTGCCAAACAATTAGCT
ATTTTGCCACAAAATCCTTCTGCACCTGATGGTTTGACGGTGTTTGAATTAATTTCTTATGGACGTTCCCCGCATCAAAG
TAGTTTTAAATCCATTACCGCAAAAGATCGCGAAATTATTTTTTGGTCATTGCGCGTGACGAATTTAACGGAGTTCGCGG
ATCGACCAATTGATAGTTTATCAGGTGGACAACGGCAACGTGCTTGGATTGCCATGGCACTTGCTCAAGAAACGGATGTG
CTTTTTCTTGATGAGCCGACTACCTTTTTAGATATGACGCACCAACTAGATGTACTTAATTTATTAAAACAATTAAACCA
ATCGGAAAACCGTACAATTGTGATGGTTGTCCACGATTTAAATCACGCATCTCGTTACGCGCACCATATGATTGCTATTA
AAGAAGGAAAAGTCATTGCAGAAGGAACACCAACAAGCGTCATGACCGAACAAACTTTAGAAGACGTTTTTAATATCAAA
GCAGATATTTTAATTGATCCTCGTAGCGGTGTCCCTCTTTGCCTTCCATACGAAACTTGCAACGGATGCGAAATTGTAAA
GGAGCTTGATTCCATTGCCAAATGA

Protein sequence : 
MKDLHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKSTILKTMSRLMKPSKGAVYLDGKSIHNESTREIAKQLA
ILPQNPSAPDGLTVFELISYGRSPHQSSFKSITAKDREIIFWSLRVTNLTEFADRPIDSLSGGQRQRAWIAMALAQETDV
LFLDEPTTFLDMTHQLDVLNLLKQLNQSENRTIVMVVHDLNHASRYAHHMIAIKEGKVIAEGTPTSVMTEQTLEDVFNIK
ADILIDPRSGVPLCLPYETCNGCEIVKELDSIAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-58 49
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-58 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-55 46
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 9e-53 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-50 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-50 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-50 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-50 44
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-56 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-52 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-52 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-52 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-52 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMHCC_0596 YP_002349566.1 ferric enterobactin transport ATP-binding protein FepC BAC0164 Protein 6e-53 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMHCC_0596 YP_002349566.1 ferric enterobactin transport ATP-binding protein FepC VFG1042 Protein 5e-53 45
LMHCC_0596 YP_002349566.1 ferric enterobactin transport ATP-binding protein FepC VFG0925 Protein 4e-57 45