|
Name : LMHCC_2576 (LMHCC_2576) Accession : YP_002351525.1 Strain : Listeria monocytogenes HCC23 Genome accession: NC_011660 Putative virulence/resistance : Virulence Product : virulence-associated E family protein Function : - COG functional category : R : General function prediction only COG ID : COG5545 EC number : - Position : 2567732 - 2570170 bp Length : 2439 bp Strand : - Note : - DNA sequence : TTGAATGCGAAAGATATTGCTATCTCCGCAGATGGCAAACTGACTCTAGCAGTCGGAAAAAGCCGGAAAGAAAAGGCCTG GAAGAACAAAGAAACTTCATGGCAAAAAGTACTGGAGAAAATAAGTCAGACGACAAGAACGAAAGAAACTATCGACGAAT ACTTGCAGATGTCGAAAGCAGAGCAATCTGTGATAAAAGATGTTGGTGGGTTCGTAGGTGGTACATTGCTAAAAGGTCGT CGAAAAGCCGAAAACGTAAAATGGCGTCAATTGATAACGCTAGATGCCGATTTTGCAGCTCCGGGGCTCTGGGAAGAGAT AGAGCTGTTTTACAACTTTGCTTGTGCTGTTTACTCAACGCATAAGCATACTGATGCAAAGCCGCGATTGCGGGTAGTTA TCCCGCTGACGAGAGCAGTTACACCAGATGAATACCAAGCGGTTAGTAGAAGGATTGCAGCTGATTTGGATATCGATGTA TTTGACGATACGACTTATCAGCCTCATCGTTTAATGTACTGGCCAAGCACCGCGAAAGATGGCACATTTGAGTTCCACTA CCAGGATGGCGCTTGGCTTGACCCGGATAAGGTGCTGGACCGGTACGATGATTGGACAGACCCGTCATTTTGGCCAGAGT CATCTAGACGTGAAAATGCACGCAAAAAACTGGCTGATAGGCAAGGTAATCCGTTAGAGAAACCTGGTATCGTTGGAGCA TTTTGTAAAACTTACATGATTCAAGATGCTATTGAGGCGTTTTTGCCAGATAGATATGAGCCTACCGGGGATGGGCGTTA CACATACGCCGATGGAAGCACGGCAGGTGGATTGGTGCTATATGAAAATGGGCTATTTGCTTATAGCCATCATGGCACCG ACCCTATTTCCGAAAAACTGGTAAATGCTTTTGATTTAGTGCGTATCCACAAATTTGGCGCACAGGATGATGACGCGCAA GAAGGAACTCCGGTTAATCGCTTGCCTTCATTTATGGCCATGGCCGATTTTGCAAGAAATGATGACAGTGTCAAAGAGCA TCTAGTTGAGTCCTCGCTTACAAGTGCATTAGAAGATTTTGCAGACATGCTGGACGAAGTGGATGAGGAAAGCGAAGAAG TAGATAAGAGCTGGATGAAGAAACTAACCCTCAATCGAAATGGCAAAGTGGAGTCCACAGCTCCGAATATCTTACGAATT TTAGAGAATGACCCAAACCTGCGAGGGAAGTTTGGCTACAACGAATTTAACTACCGAATGTCCATTCTTGGTAATGTGCC TTGGAGAAAAACCACGAAGAAGGTAGATGAAAAGAACGACTTGGACGATAGCGCCTTGCGTAATTACCTAGAGTCCGTTT ATCAGATTAGTGGTAAGGATAAAATCAAAGATGCGCTCAGGGAGGTTATGCATCGTCAACGTTTTCACCCAGTTCGGAAG TATTTGAGTGGACTGGAGTGGGATGGAAAAGAGCGGCTGGATACACTTTTGGTTGATTACCTTGGTGCAGCGGACTCGGA ATATACGAGAATTGTGACTCGCAAGACGTTTGCAGCCGCTGTGGCCAGGGTGCTTGTGCCCGGAATCAAATTTGATCAAG TCCTTACGTTAACTGGGACGCAAGGCATTGGTAAAAGCACACTGCTAGATAAACTGGGTAAGGAGTGGTATTCAGATAGT TTAGAGGACTTACACGGTAAATCAGCCTACGAGTTGCTGCAAGGCTACTGGATTATGGAACTAGGTGAGCTATCCGCATT GAATAAAACAGAAGTAGAGAAAGCTAAAGCATTTATATCAGCAAGAGAAGACCGCTTCCGCGTAGCGTATGGTGAGAATG TGCAGGGCTTTCCCAGACAATGCATTTTCATAGCAACAACAAACGATAACACCTTTCTGCGAGATGGAACAGGTAATCGG CGTTTCTGGCCTGTAGAAGTTCATGGGTTTGGTGAAAAGTCAGTATTTACGGACTTGAAAGAAGATGAGGTGGACCAAAT TTGGGCGGAGGCTTTTGTCCGTTATAAAGAAGGGGAAGCGTTGTATCTGCAAGGTGAAATGGAGAATCAAGCAAGAATGC AACAAGCTAAGTTTACAGAGTCTAATGTCTTAGAGGGGCTCATCCGTGAGTATCTCGAAACTCCTGTGCCTGCCGACTGG AGTAGTTGGAATGCGCCAGCAAGAAGGGCGTTTTTAAGGGGAGAGGACTTCGAGGAGGTCGAGCGGGATGACTTAGTGCT GCGAGACAAGATTTGCGCCATGGAAATTTGGTGCGAGTTAATGGATGGCGACGCAAAACAGTTAACGAAGCAGAAAGCGC GTGAGATAAATGATGCACTTCGTAACATAGAAAACTGGAAAGATAATCAAGGAGTTTTACGCTTCGGTAAATTGTACGGA AGGCAGCGAGCCTACACTAGGATTACTTTAGCGAAGTAA Protein sequence : MNAKDIAISADGKLTLAVGKSRKEKAWKNKETSWQKVLEKISQTTRTKETIDEYLQMSKAEQSVIKDVGGFVGGTLLKGR RKAENVKWRQLITLDADFAAPGLWEEIELFYNFACAVYSTHKHTDAKPRLRVVIPLTRAVTPDEYQAVSRRIAADLDIDV FDDTTYQPHRLMYWPSTAKDGTFEFHYQDGAWLDPDKVLDRYDDWTDPSFWPESSRRENARKKLADRQGNPLEKPGIVGA FCKTYMIQDAIEAFLPDRYEPTGDGRYTYADGSTAGGLVLYENGLFAYSHHGTDPISEKLVNAFDLVRIHKFGAQDDDAQ EGTPVNRLPSFMAMADFARNDDSVKEHLVESSLTSALEDFADMLDEVDEESEEVDKSWMKKLTLNRNGKVESTAPNILRI LENDPNLRGKFGYNEFNYRMSILGNVPWRKTTKKVDEKNDLDDSALRNYLESVYQISGKDKIKDALREVMHRQRFHPVRK YLSGLEWDGKERLDTLLVDYLGAADSEYTRIVTRKTFAAAVARVLVPGIKFDQVLTLTGTQGIGKSTLLDKLGKEWYSDS LEDLHGKSAYELLQGYWIMELGELSALNKTEVEKAKAFISAREDRFRVAYGENVQGFPRQCIFIATTNDNTFLRDGTGNR RFWPVEVHGFGEKSVFTDLKEDEVDQIWAEAFVRYKEGEALYLQGEMENQARMQQAKFTESNVLEGLIREYLETPVPADW SSWNAPARRAFLRGEDFEEVERDDLVLRDKICAMEIWCELMDGDAKQLTKQKAREINDALRNIENWKDNQGVLRFGKLYG RQRAYTRITLAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAOV_0312 | YP_005735829.1 | virulence-associated protein E | Virulence | ¥ÕSa1 | Protein | 0.0 | 50 |
| MW1408 | NP_646225.1 | hypothetical protein | Not tested | ¥ÕSa2 | Protein | 0.0 | 50 |
| SAUSA300_1410 | YP_494107.1 | virulence-associated protein E | Virulence | ¥ÕSa2 | Protein | 0.0 | 50 |
| SH1781 | YP_253696.1 | hypothetical protein | Not tested | ¥ÕSh1 | Protein | 0.0 | 50 |
