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Name : LMHCC_2408 (LMHCC_2408) Accession : YP_002351359.1 Strain : Listeria monocytogenes HCC23 Genome accession: NC_011660 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence ClpC/mecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2381878 - 2384340 bp Length : 2463 bp Strand : - Note : - DNA sequence : ATGATGTTTGGACGATTTACGCAAAGAGCTCAGAAAGTACTCGCGTTGTCACAAGAAGAGGCGATGCGTTTGAATCATAG TAATTTAGGAACAGAACATATTTTATTAGGGCTTGTAAGAGAAGGCGAAGGAATTGCGGCGAAAGCTCTCTATGAACTGG GAATTAGTTCTGAAAAAGTGCAGCAAGAGGTAGAAGGATTAATTGGTCATGGGGAAAAAGCTGTGACGACGATCCAATAT ACACCTCGTGCGAAAAAAGTAATTGAACTTTCCATGGATGAGGCTCGTAAATTAGGGCATACTTACGTTGGGACAGAACA TATCTTACTTGGGCTTATTCGTGAAGGCGAAGGAGTTGCGGCGCGTGTTTTAAGTAATCTTGGTATTAGTTTGAATAAAG CTCGTCAGCAAGTTTTACAGCTCTTAGGCGGCGGTGATGCTACTGGGGCAGGGAGACAAACAAATACGCAAGCTACACCG ACTTTAGATAGTTTGGCACGTGATTTAACAGTTATTGCTCGGGAAGATAATTTGGATCCGGTTATTGGCCGTTCTAAAGA AATCCAACGTGTGATTGAAGTACTTAGTCGCCGGACGAAAAATAACCCGGTACTCATCGGGGAACCGGGTGTTGGTAAAA CAGCGATTGCAGAAGGCTTAGCGCAACAAATTGTTCGTAATGAAGTGCCTGAGACCTTACGTGGAAAACGTGTAATGACA CTGGATATGGGGACTGTTGTAGCAGGTACAAAATATCGTGGGGAATTCGAAGACCGTTTGAAGAAAGTAATGGATGAAAT TCGTCAAGCTGGTAATGTTATTCTATTTATTGATGAATTGCATACGTTAATCGGTGCTGGTGGGGCAGAAGGTGCGATTG ATGCTTCGAATATCTTGAAGCCACCTCTAGCTCGTGGAGAATTGCAATGTATTGGGGCAACAACGCTGGATGAGTACCGT AAATACATCGAAAAAGATGCGGCGCTTGAGAGACGTTTCCAACCAATCAAAGTAGATGAACCAACTGTAGAAGAATCTAT TCAAATTTTACATGGATTGCGTGATCGTTATGAAGCGCATCACCGTGTTGCAATTACGGATGAAGCTCTTGAGGCTGCTG TTCGTCTATCTGATCGTTACATTTCTGACCGTTTCTTACCCGATAAAGCGATTGATGTAATTGATGAATCTGGGTCTAAA GTACGTTTAAAATCTTTTACAACGCCAAAAAATGTAAAAGAAATGGAAAACAATTTATCTGAATTGAAAAAAGAAAAAGA TGCGGCTGTTCAAGGACAAGAATTTGAAAAAGCAGCGTCATTACGCGATAAAGAACAAAAACTTAAAAAATCATTAGAAG AAACAAAAGCGAATTGGCAAGAAAAGCAAGGGCTTGACCATAGTGAAGTAACAGAAGATATTGTTGCTGAAGTTGTTGCT AGTTGGACTGGGATTCCAGTTGCAAAACTTGCGGAGACAGAGACAAATAAACTTTTAAATATGGAGAAACTTTTACATGA ACGTGTGATTGGGCAAGATGCTGCGGTGAAAGCTGTTTCGCTAGCTGTACGTCGAGCTCGTGCGGGGCTTAAAGATCCTA AGCGTCCAATTGGTTCCTTTATTTTCCTTGGACCTACTGGTGTTGGGAAAACAGAACTTGCTCGCGCGCTTGCTGAGTCT ATGTTTGGCGATGAGGATTCGATGATTCGAATTGACATGTCTGAGTACATGGAGAAATTCTCCACAGCTCGTTTAGTTGG GGCTCCTCCAGGTTATGTAGGCTATGAAGAAGGTGGGCAACTGACAGAAAAAGTTCGTCAAAAACCTTATTCAGTAGTCC TTTTAGATGAAATTGAAAAAGCACATCCGGATGTATTTAATATGTTGCTACAAGTGCTTGACGATGGTCGTTTGACTGAT TCTAAAGGACGAGTGGTTGATTTTAGAAATACGGTTATCATTATGACTTCCAATATTGGGGCTCAAGAAATGAAACAAGA TAAATCAATGGGCTTTAATGTTATTGATCCGCTTAAAGACCATAAGGCTATGGAGCATCGTGTTTTACAAGATTTAAAAC AGGCGTTCCGACCAGAGTTTATCAACCGAATTGATGAAACAATTGTATTCCATTCGCTACAAGAAAAAGAATTGAAACAA ATTGTTACACTGCTCACTGCCCAATTAACGAAACGTCTAGCTGAACGCGATATTCATGTGAAATTGACTGAAGGCGCGAA AGCTAAAATTGCCAAAGACGGTTATGATCCAGAATACGGAGCCCGTCCTTTGAAACGAGCTATTCAAAAAGAAGTAGAAG ATATGCTTTCTGAAGAATTGCTTCGTGGCAACATTAAAGTAGGCGATTACGTAGAAATTGGTGTGAAAGATGGCAAGTTG GAAGTTAGAAAAAAAGATGCACCAAAAAAGAAAACAACCGCCAAAAAGGTAAAAGCTAAATAA Protein sequence : MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQY TPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP TLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMT LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYR KYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAIDVIDESGSK VRLKSFTTPKNVKEMENNLSELKKEKDAAVQGQEFEKAASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVA SWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES MFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTD SKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQ IVTLLTAQLTKRLAERDIHVKLTEGAKAKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDYVEIGVKDGKL EVRKKDAPKKKTTAKKVKAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 58 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-96 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LMHCC_2408 | YP_002351359.1 | negative regulator of genetic competence ClpC/mecB | VFG0079 | Protein | 0.0 | 99 |
| LMHCC_2408 | YP_002351359.1 | negative regulator of genetic competence ClpC/mecB | VFG0080 | Protein | 3e-155 | 52 |
