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Name : LMHCC_2280 (LMHCC_2280) Accession : YP_002351232.1 Strain : Listeria monocytogenes HCC23 Genome accession: NC_011660 Putative virulence/resistance : Virulence Product : internalin-A Function : - COG functional category : S : Function unknown COG ID : COG4886 EC number : - Position : 2254799 - 2256568 bp Length : 1770 bp Strand : - Note : - DNA sequence : ATGAAATCCAAAGGGAGACTGTTTTTGTACGTTGTTTTGGCGTTGTCGATTGTTATTGGGACGAATGTATTTATAAAAAT AGACGCACACGCAGCCGCTGCACCACCAGCTGCAATCAGCCAGATTTTTCCCGATAATGCTTTAGCGACAGAAATTCAAA CTACACTCGGAAAGTCGAGTACAGCAGAGGTTGTCACTCAAACAGATTTAGATACTATTAATTCATTAACCCTTACATCT AAAGGTATTAGCTCCCTAGAAGGTATGAACTATTTGACCAATTTAGGAACTTTAATTTTATCAGGTAATCAAGTAAGTGA TATTTCGCCACTTAAGGGATTAACTAACTTGACCATGCTTCAGCTAAGTGGAAATCCGATTAGCGACATTAGCGCACTTA GTAACTTGAAAAACTTACAAGCTCTAGATATTAACGACGCGCAAATTACTGACATCACGCCACTGAGCGGTTTAACAAAT CTAAAGGGTTTAGGCTTATATGATAATCAATTGGAGAACCTTAGTGGAGTAAATAATTTACACCAACTCCGCTCCTTAAA TGTTAGTAAAAATAAGCTTACAAATCTAGATGAGCTACAAGCACTAAGCAATTTAGGCGTTCTATATGCAAATGAAAACC AAATTGACAATCTTCAGGGGATAAGTGCTTTAAATAACCTTTTCTTGCTTGATTTATCAGCGAACCAAATTGTGGATACT ACTCCACTCGCTGGCTTAACCAATGTACAAACATTATACGTATCAAACAATCAAATTAGTGATGTAACTGGTCTTTCGAG TTTAATAAATCTAGATTGGCTCGATATAAGTCAAAATAAAATTAGTAATATTAGACCTTTAAACAGTTTAACGAAATTAA CAATTATTCAAATGACTAATCAATTAATCGTAAACGAACCGATAAGTTTCGAAAGCACCATAACTATTCCTAATTTAATA AAAAACATTGCGGAACAAACGATTGATCCAGATACAATTAGTGATAATGGTGTGTATGCGAATGAATCGGTTACATGGAA TTTGCCTACTTATATTCCAAAAGTCAGCTATACCTTTATTGAACGTGATACGGTTGGGAATGCAACTGGTAATTTCAGTG GGACTGTAGAACAACCATTGGTGCAATATTTTAAAGCAACTTTCAATATTGACGGGCAAGAAACAACGGAAAATGTCGAA ACAGGGACACTTTTACAAGAACCACCAACCCCAGTCAAAGAGGGTTATACATTTAACGGGTGGTATGATGCTGAAACAGG TGGAACAAAATGGGATTTTACAGCCGATACGATGCCAGCAAATGATATAACTTTATATGCTCAGTTTAGTATTAATAGTT ATACCGCAACTTTTGATGTAGATGGCGTCATTTCTACTCAAACGGTAGACTATCAAGGTTTACTGGAAGAACCACCAGCG CCAACTAAAGAGGGTTATACATTTAAAGGTTGGTATGATGCCAAATCTGGTGGAACAAAATGGGACTTCACAAACAATCA AATGCCAGCGAAAGATATAACCTTGTATGCCCAGTTTAGTAAAGATGCAGCTTCTGGTGGGGACGATGGAGGAACCGATG AAGGCGGAGGTAACTCTGAAAATAGTACAGAGGGAGCTCCTAATACGAGTGATATAGATACTATAAACCACATCGTACTA CCAGCAACAGGAGATGACCATGTGCTTTTTCCAATCTTTATTGGAACATTTCTTACGAGTTTAGCATTACTTACACTTAG AAGAAAATAA Protein sequence : MKSKGRLFLYVVLALSIVIGTNVFIKIDAHAAAAPPAAISQIFPDNALATEIQTTLGKSSTAEVVTQTDLDTINSLTLTS KGISSLEGMNYLTNLGTLILSGNQVSDISPLKGLTNLTMLQLSGNPISDISALSNLKNLQALDINDAQITDITPLSGLTN LKGLGLYDNQLENLSGVNNLHQLRSLNVSKNKLTNLDELQALSNLGVLYANENQIDNLQGISALNNLFLLDLSANQIVDT TPLAGLTNVQTLYVSNNQISDVTGLSSLINLDWLDISQNKISNIRPLNSLTKLTIIQMTNQLIVNEPISFESTITIPNLI KNIAEQTIDPDTISDNGVYANESVTWNLPTYIPKVSYTFIERDTVGNATGNFSGTVEQPLVQYFKATFNIDGQETTENVE TGTLLQEPPTPVKEGYTFNGWYDAETGGTKWDFTADTMPANDITLYAQFSINSYTATFDVDGVISTQTVDYQGLLEEPPA PTKEGYTFKGWYDAKSGGTKWDFTNNQMPAKDITLYAQFSKDAASGGDDGGTDEGGGNSENSTEGAPNTSDIDTINHIVL PATGDDHVLFPIFIGTFLTSLALLTLRRK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| inlD | AAB67970.1 | - | Virulence | Internalin | Protein | 1e-119 | 47 |
| inlG | CAA07456.1 | internalin G | Virulence | Internalin | Protein | 2e-87 | 46 |
| inlF | CAC20634.1 | internalin F | Virulence | Internalin | Protein | 1e-87 | 46 |
| inlC2 | AAB67969.1 | internalin | Virulence | Internalin | Protein | 6e-111 | 44 |
| inlH | CAA07457.1 | internalin H | Virulence | Internalin | Protein | 7e-112 | 44 |
| inlD | CAC20635.1 | internalin D | Virulence | Internalin | Protein | 1e-110 | 43 |
