Gene Information

Name : LMHCC_0173 (LMHCC_0173)
Accession : YP_002349149.1
Strain : Listeria monocytogenes HCC23
Genome accession: NC_011660
Putative virulence/resistance : Virulence
Product : ferrichrome transport ATP-binding protein FhuC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 173046 - 173837 bp
Length : 792 bp
Strand : +
Note : -

DNA sequence : 
ATGAAATCAGCATTAGAACTAAAAAATGTTTCTTTCTCACGTAAAAGAGATTTCGAAATGAAAAACGTGAGTGCAAGCAT
TCCAGAAGGGAAAATCACTACGCTTATCGGTCCAAACGGCTCGGGAAAATCGACTATGCTGCGTTTGATGATGCGCCTTT
TGACGCCGGATAGCGGGGAGATTTTCTTAAATGATAAAAACATTACTGAAATCCCATCTAAAGATTTAGCGAAAAAAATG
ACGATGTTATCACAAGCTCCAGAAGGTTTGGTAGATGTGATGGTGCATGATTTAGTGGCATATGGCCGTTTGCCGCACCG
AAGTTGGCTCTCCACTTTGCAAGAGGAGGACGAGGCGGTCATTCACTGGGCTATTAAAGTGTGTAACTTAGAAGAACTGG
CTTATCGCCCGCTACATTCGTTATCAGGCGGAGAACGACAACGTGCTTGGCTGGCAATGGCTCTTGCGCAAAAAACGCCC
ATTTTATTATTAGATGAGCCAACTACTTATTTAGACATTGCGCATCAACTAGAATTGTTAGACTTACTCGTCCATTTAAA
CAAAGAATATAATTTAACTATCGTGCTCGTTTTACATGATCTGAATCAAGCTGCGATTTATAGTGATTATGTGTTTGTGT
GCGAAAATGGTCAATTAGTCAAAGACGGCTCGCCTAGAGAAGTTTTCACGACAGAGCTGCTTCGAGATGTTTTCCATATT
ACAGCGGATATTACCGAAAAAGATGGAAAGCAGCATATTCATCCACTTGCTTCGACTCGTTTTGAATATTAA

Protein sequence : 
MKSALELKNVSFSRKRDFEMKNVSASIPEGKITTLIGPNGSGKSTMLRLMMRLLTPDSGEIFLNDKNITEIPSKDLAKKM
TMLSQAPEGLVDVMVHDLVAYGRLPHRSWLSTLQEEDEAVIHWAIKVCNLEELAYRPLHSLSGGERQRAWLAMALAQKTP
ILLLDEPTTYLDIAHQLELLDLLVHLNKEYNLTIVLVLHDLNQAAIYSDYVFVCENGQLVKDGSPREVFTTELLRDVFHI
TADITEKDGKQHIHPLASTRFEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-39 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-43 47
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-43 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-43 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-43 47
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-38 47
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-40 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-40 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMHCC_0173 YP_002349149.1 ferrichrome transport ATP-binding protein FhuC BAC0164 Protein 1e-39 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMHCC_0173 YP_002349149.1 ferrichrome transport ATP-binding protein FhuC VFG1042 Protein 1e-39 49
LMHCC_0173 YP_002349149.1 ferrichrome transport ATP-binding protein FhuC VFG0925 Protein 3e-34 43