Gene Information

Name : LMHCC_0172 (LMHCC_0172)
Accession : YP_002349148.1
Strain : Listeria monocytogenes HCC23
Genome accession: NC_011660
Putative virulence/resistance : Virulence
Product : iron compound ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 172039 - 173049 bp
Length : 1011 bp
Strand : +
Note : -

DNA sequence : 
ATGACAACTGTGAAGGCGCATGATCCGCGGCGAAAACGTAGACGGATAACTTTTATTGTAGTAATCATTTTACTTATTTT
AGCTTTTTTCTACGGACTGACAACTGGGTCCGTGAAAATTACATATAGTGACGCTTGGCAGACGCTAACTGGCGGGGGAA
GCGACCTAGCGAATCAATTGATTTGGAACTTGCGCTTGCCGCGGTTATTAATTGCTTTCTTAGTAGGAGCGGCGCTGGCG
ATTGCTGGATGCTTGCTGCAAGGCGTGATGCGGAATCCATTAGCTGACCCAGGCGTAATTGGGGTTTCAGCCGGTGGTGG
CTTCGTGGCCATTTTAATGACATTAGCATTTCCTGCGTTAGCTTCCTTTGTGCCGATTGGTGCGTTTTTAGGGGCGTTTG
GAACAGCTATTTTGATTTATTTGCTTGCATGGGATCGCGGTGTTTCTCCTTTACGCGTAATTTTGTCGGGTGTAGCGATT
AATGCGTTTATTGGAGCGATGACTTCTGGCGTAATGGTGCTGTATAGCAACCGGGTCCAAAGTGTCATTTCTTGGATGAC
AGGAACGCTCTCCGGGAAAAGTTGGTATCATTTGGATATGATTTGGCCGTATATGCTGGTCGGGTTTGTTTTAAGTGGTT
TTGCGATTCGTTCTTCTAATGTATTGCTACTCGGGGACGATGCGGCGAAATTGCTTGGCTTTTCTGTGGAACGGCATCGC
TTTTTCATTATAATGTTGGCGGCCTTTCTAAGCGGCGTTGCGGTTAGTGTAGCTGGACTTATTGGCTTTGTTGGGCTTGT
CGTGCCACATATTTTTCGTCTGATTATCGGGAATGACTATAAATATTTACTGCCGCTATCCGCACTCGGCGGGGCTTTAT
TAGTTGGTTTTGCTGATACGGCGGCTAGAAGTTGGTTCGGTTCCATTGAACTTCCTGTTGGAATCCTGCTTGCGATGATA
GGCGCACCATTCTTCTTGTTCTTACTTCAAAGAGGGAGGGTTGCTTCATGA

Protein sequence : 
MTTVKAHDPRRKRRRITFIVVIILLILAFFYGLTTGSVKITYSDAWQTLTGGGSDLANQLIWNLRLPRLLIAFLVGAALA
IAGCLLQGVMRNPLADPGVIGVSAGGGFVAILMTLAFPALASFVPIGAFLGAFGTAILIYLLAWDRGVSPLRVILSGVAI
NAFIGAMTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHR
FFIIMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMI
GAPFFLFLLQRGRVAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecD AAL08452.1 FecD Virulence SRL Protein 1e-25 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMHCC_0172 YP_002349148.1 iron compound ABC transporter permease BAC0163 Protein 8e-26 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMHCC_0172 YP_002349148.1 iron compound ABC transporter permease VFG1043 Protein 7e-26 43