|
Name : LMHCC_1270 (LMHCC_1270) Accession : YP_002350231.1 Strain : Listeria monocytogenes HCC23 Genome accession: NC_011660 Putative virulence/resistance : Resistance Product : arsenical pump membrane protein Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG1055 EC number : - Position : 1310501 - 1311796 bp Length : 1296 bp Strand : - Note : - DNA sequence : ATGCAGATTACTTTAGCTATTTTAGTATTTGCCTTCACGTTATTTTTGGTGATTTGGCAACCAAGAAAATTATCAATCGG ATGGTCAGCTTGTGGAGGTGCGATAATTGCCTTATTACTTGGCGTCGTCACTTTATCAGATGTCGCAACAGTTACAGGAA TTGTTTGGAATGCGACGCTCGCTTTTATTGCTATTATAATTATTTCATTGATTTTAGATAAAATTGGCTTTTTTGAGTGG GCGGCTTTACATATGGCGCGATTAGCAAGAGGTAATGGCTTATTAATGTTCATTCTTATTTCTATTTTGGGAGCTTTCGT TGCTGCGTTGTTTGCTAATGACGGGGCGGCGCTAATTTTGACACCAATTGTTCTAGCGATGGTGCGAGCGCTGAATTTTG ATGAGAAAAAGGTATTTCCATTTATTATTGCTAGCGGTTTTATAGCGGATACGACGTCCTTACCGCTCGTAGTTAGTAAT TTAGTCAATATAGTTTCGGCTGATTTTTTCGGTATTAGTTTTTCGCAGTATGCGCTTATTATGTGGATTCCAACGGTTTT CTCTTTAGTTGCGAGTATTTTAATCTTATATTTTTATTTTCGGAAAGCATTACCTAAAAAATATGATACGCGAGTGATTC GAGAGCCGGCTTCTGCAATTAAAGATAAAAAGATGTTTCGTGTTTCTTGGGGAATACTTATCATCCTTGTAGCAGGCTAT TTTTTGAGTAGTTTTTTAGACATTCCAGTGTCATTTATTGCCTTGCTAGTTGCTGTTATCTTTTTGTTAGTCAGTGCAAA AAGTCATGCCGTCTCGACAAAAGCTATTTTAAAAGGAGCACCTTGGAATATTGTGTTTTTCTCGGTTGGTATGTATGTAG TTGTATATGGTTTGCAAAATGTCGGTATCACAAAATTATTATCAGAAGCAATTACATATGTTGCGCACTTTGGATTATTT GCGGGAACAGTTGGAATGGGATTTATTGCTGCAATACTGTCTTCTGTCATGAATAATTTGCCAACAGTAATGATAAACGC ACTTGCAATCGATCATACGTCATTTACAGGCGTGATGAAAGAAGCGTTAGTCTATGCAAATGTCATTGGTTCTGATTTAG GTCCGAAAATAACACCAATTGGCTCGCTAGCAACTTTACTTTGGCTACATGTTCTAGCGCAGAAAGGGATAAAGATAAGC TGGGGCTCTTATTTCAAAATTGGCATTGTGATTACTATTCCAGTTTTATTCATAACGCTCGTCGGACTATATTTTTCACT ACTTATTTGGAATTAA Protein sequence : MQITLAILVFAFTLFLVIWQPRKLSIGWSACGGAIIALLLGVVTLSDVATVTGIVWNATLAFIAIIIISLILDKIGFFEW AALHMARLARGNGLLMFILISILGAFVAALFANDGAALILTPIVLAMVRALNFDEKKVFPFIIASGFIADTTSLPLVVSN LVNIVSADFFGISFSQYALIMWIPTVFSLVASILILYFYFRKALPKKYDTRVIREPASAIKDKKMFRVSWGILIILVAGY FLSSFLDIPVSFIALLVAVIFLLVSAKSHAVSTKAILKGAPWNIVFFSVGMYVVVYGLQNVGITKLLSEAITYVAHFGLF AGTVGMGFIAAILSSVMNNLPTVMINALAIDHTSFTGVMKEALVYANVIGSDLGPKITPIGSLATLLWLHVLAQKGIKIS WGSYFKIGIVITIPVLFITLVGLYFSLLIWN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SH0109 | YP_252024.1 | arsenical pump membrane protein | Not tested | SCCmec | Protein | 3e-124 | 67 |
| arsB | YP_005754065.1 | arsenical pump membrane protein | Not tested | Type-XI SCCmec | Protein | 1e-119 | 66 |
| arsB | YP_252017.1 | arsenical pump membrane protein | Not tested | SCCmec | Protein | 3e-119 | 65 |
| arsB2 | YP_001007633.1 | arsenical pump membrane protein | Not tested | YAPI | Protein | 2e-99 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LMHCC_1270 | YP_002350231.1 | arsenical pump membrane protein | BAC0574 | Protein | 7e-122 | 66 |
| LMHCC_1270 | YP_002350231.1 | arsenical pump membrane protein | BAC0575 | Protein | 1e-120 | 65 |
| LMHCC_1270 | YP_002350231.1 | arsenical pump membrane protein | BAC0578 | Protein | 9e-100 | 59 |
| LMHCC_1270 | YP_002350231.1 | arsenical pump membrane protein | BAC0576 | Protein | 3e-100 | 58 |
| LMHCC_1270 | YP_002350231.1 | arsenical pump membrane protein | BAC0577 | Protein | 5e-100 | 58 |
| LMHCC_1270 | YP_002350231.1 | arsenical pump membrane protein | BAC0031 | Protein | 7e-97 | 57 |
