Gene Information

Name : LMHCC_1261 (LMHCC_1261)
Accession : YP_002350222.1
Strain : Listeria monocytogenes HCC23
Genome accession: NC_011660
Putative virulence/resistance : Virulence
Product : ParB-like nuclease domain-containing protein
Function : -
COG functional category : K : Transcription
COG ID : COG1475
EC number : -
Position : 1303720 - 1304226 bp
Length : 507 bp
Strand : +
Note : ParB-like nuclease domain

DNA sequence : 
ATGAATTACAAAAGCCCAGTATATAGCGTCACTCCAATCCACTACACAAAACTACAAGCAAATAATTATAATCCGAACAC
AGTCCCCGCACTTGAACTCAAATTGCTTGAAAAATCAATTTGGGAAGATGGATTTACGCAACCCATTGTTTGTTATCCCT
TGGAAGGCAGCGATAAATATGAAATAATAGACGGGTTCCACCGTTACACAATCATGACCACCTCCAAACGAATTCGCGAA
CGAGAAAACGAATACCTGCCAGTTGTCATTCTCGAAAAAGATACCGTGAATCGAATGGCCTCTACCATACGTCATAATCG
CGCACGTGGATTCCATAACGTAGAATTAATGTCCAACATTGTTAGTGAACTTGTCGATAGTGGAATGTCCGATAGCTGGA
TCATGAAAAACATTGGAATGGATGCCAACGAAATCTTACGCTTAAAACAAGTGAGCGGACTTGCTCACCTCTTCTTAGAA
AAAGAATTTAGTCATGCATCTGATTAA

Protein sequence : 
MNYKSPVYSVTPIHYTKLQANNYNPNTVPALELKLLEKSIWEDGFTQPIVCYPLEGSDKYEIIDGFHRYTIMTTSKRIRE
RENEYLPVVILEKDTVNRMASTIRHNRARGFHNVELMSNIVSELVDSGMSDSWIMKNIGMDANEILRLKQVSGLAHLFLE
KEFSHASD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
M5005_Spy_0164 YP_281528.1 parB-like nuclease Not tested Not named Protein 4e-40 55
EF0607 NP_814365.1 ParB-like nuclease domain-containing protein Not tested Not named Protein 5e-31 50
ef0120 AAM75321.1 EF0120 Not tested Not named Protein 3e-31 50
STY4584 NP_458668.1 conserved hypothetical protein Not tested SPI-7 Protein 1e-23 46
t4278 NP_807876.2 hypothetical protein Not tested SPI-7 Protein 1e-23 46
Z1204 NP_286739.1 hypothetical protein Not tested TAI Protein 2e-22 46
Z1644 NP_287147.1 hypothetical protein Not tested TAI Protein 2e-22 46
Z1644 AAQ19140.1 putative ParB-like nuclease Not tested PAI I CL3 Protein 7e-23 44
ibrB ADD91736.1 predicted transcriptional regulator IbrB Not tested PAI-I AL862 Protein 7e-23 44
z1204 CAD33764.1 Z1204 protein Not tested PAI I 536 Protein 2e-23 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMHCC_1261 YP_002350222.1 ParB-like nuclease domain-containing protein VFG1505 Protein 7e-24 44