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Name : BCAH187_C0016 (BCAH187_C0016) Accession : YP_002336027.1 Strain : Genome accession: NC_011655 Putative virulence/resistance : Unknown Product : group II intron reverse transcriptase/maturase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3344 EC number : - Position : 224412 - 226340 bp Length : 1929 bp Strand : - Note : identified by match to protein family HMM PF00078; match to protein family HMM PF01844 DNA sequence : ATGAATGATAGAACTAAGTCCACGCCAAAGAATAAGAAACTAAGACACAACGAATACTACGGTATCCAAACTTTCTTAGA TAACTTATACCAGAAGGCAACAAAGAAAAATTCTTTTAAAAATTTAATGCCTATCATTATATCAGATGAAAATATACTCC TCGCGTTTCGTAATATTAAAGGAAACAAAGGGAGTAAAACAGCAGCTTGTGACAATGTAAACATTAAGGATATTGAGAGA ATGGAACAAAGCTATTTCTTGAACGAAGTAAAAAGACGCTTTCAAAACTACCAACCGCAGAAAGTAAGGCGCAAGGAAAT ACCGAAACCCAATGGGAAAACCAGACCTCTGGGAATACCAAGTATGTGGGATAGGATTATCCAACAATGCATCTTACAAG TAATGGAGCCTATCTGTGAAGCACACTTCTGTAACCGAAGTCATGGATTTCGCCCAAACAGAAGTGCTGAAAATGCTATA GCAGACGCAACAAAACGGGTAAATCAGCAAAACCTTACATATGTGGTGGATATAGACATTCAGGGATTCTTTGACGAAGT AAGTCACGTCAAACTCATGCGCCAACTATGGACACTGGGTATTCGTGACAAACAACTACTAGTCATTATCCGGAAAATAT TGAAAGCGCCAGTGCAACTGCCTAACGGCAAAACGATATTTCCGACCAAAGGTACCCCGCAAGGTGGTATCCTTAGTCCA CTACTCGCCAATGTTAACCTTAACGAATTTGACTGGTGGATTAGTAATCAATGGGAAACTTTCAAAGCCAAGAAGGTAAA GCCGAGATTGAAAGATGGGATTTGGAGTAATGACACTGTAACATATTGTCTATCCAAAACATCCAAGATGAAACCAATGT ATATCGTAAGATACGCAGATGATTTTAAAATCTTTACAAATACACGTAGGAATGCGGAGAAAATTTTCGAAGCAACTCAA ATGTGGTTAGAAGAACGTCTAAAACTGCCTATCTCAACCGAAAAGTCTAAAGTAACCAATCTGAAAAAGCAACAGAGTGA ATTCTTAGGTTTCACTCTTAAGGCTGTAAAGAAAGGTAAGAAGAACGGTAACACACGATACATTGCAGTAACACACATCT CTCCAAAAGCACTGGAAAAAACAAAACAAGATTTAGCAAAACAAGTGAAAAGGATACAGAGAACCCCAAACTCTAATGAA ACAATTAAGAGAATCAGTATATACAACAGCATGGTCATTGGTAAGCACAACTATTATAAAATAGCAACGCATGCTTCCCT GGATTTCAGTAAAATGAACCATAGTCTTGGTCACATGATGTATAACAGATTCCCAAAGTCAAAAATTAGAGGAAAAAGCA ACACAAACGGATACACGAATATAGGGAAATATAAAGGGAAAGACAGAGGTATTAAACCATACCTAAAGTCAAAAGCGATG AGATTTCTCATGAAATGTCCTATTTTACCAATCTCCTATATTCAACACAAAAAACCGATGATGAAAAAGCAATCTATTAA CAGATACACCGCAGAAGGACGAGCCCTTATACACAAAAACTTGGCAGAAATAACCGAAGCGGAACTGAAATGGTTAAGAG AAAACCCAGTTATAAATGAACGGGCAACCATAGAATACAATGATAATCGAATTTCTCTTTATATTGCACAAAAAGGAAGA TGCAGTGTAACAGGTGAGAAACTCTCGCCTTGGGACATCCACTGTCACCATAAGCGATTATGGAGTGAAACAAGGGATGA CAGCTACAAAAATCTTACCATCATCAAGCCAAGTGTCCATACACTAATACACGCGACCAATATAGAAACCATAAACCAAT TCCTCAATAAATTAAAACTCAACGAGGAACAGTTAGGCAAACTTAATAAATTGCGGAAATTAGTCAAAAATGAGGAAATC TGTATGTAA Protein sequence : MNDRTKSTPKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTAACDNVNIKDIER MEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQQCILQVMEPICEAHFCNRSHGFRPNRSAENAI ADATKRVNQQNLTYVVDIDIQGFFDEVSHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSP LLANVNLNEFDWWISNQWETFKAKKVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTNTRRNAEKIFEATQ MWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRYIAVTHISPKALEKTKQDLAKQVKRIQRTPNSNE TIKRISIYNSMVIGKHNYYKIATHASLDFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAM RFLMKCPILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYNDNRISLYIAQKGR CSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATNIETINQFLNKLKLNEEQLGKLNKLRKLVKNEEI CM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ef0012 | AAM75218.1 | EF0012 | Not tested | Not named | Protein | 2e-134 | 50 |
| EF2326 | NP_815981.1 | group II intron reverse transcriptase maturase | Not tested | Not named | Protein | 8e-140 | 48 |
