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Name : BCAH187_C0165 (BCAH187_C0165) Accession : YP_002335901.1 Strain : Genome accession: NC_011655 Putative virulence/resistance : Unknown Product : group II intron reverse transcriptase/maturase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3344 EC number : - Position : 93247 - 95079 bp Length : 1833 bp Strand : + Note : identified by match to protein family HMM PF00078 DNA sequence : ATGTTAAAGAAAACTAAACTAAGGCACAGTGAATATTACGACATGCAAAGAAAGTATGATGAGTTATATTCTAATAGCCT TAATGGTAACAATTTCTATAAATTAATTGATATTATCGGTTCGGAAGAAAATATTAGATTAGCATACCGCAACATCAAAA CTAATAAGGGGAGTAACACGGCTGGAGTTGACAATTTAACCATTAAAGATATTTGGCACCTAAACGATACAAAGATTATT CATGAAGTTAGGAAACGATTAAATAACTATCAACCACAAGCAGTTAAAAGAGTCCTTATCCCAAAAGAGGGCAGTGATAA GAAGCGACCCCTGGGGATTCCAACAATTTGGGACAGATTAGTACAACAATCTATCCTCCAAGTATTGGAACCTATTTGTG AAGCTAAGTTTCATAACCATAGTTATGGATTTAGACCGAACAGAAGTACACACCATGCACTAAGTAGAGTTGTAAGTCTT ATTAACATAGGTCACCAACACTACTGTGTTGATATTGACATTAAGGGGTTCTTTGATAATGTATGCCACAAAAAGCTATT AAGGCAAATGTGGACTCTGGGAATAAGAGACAAATCACTTCTATGTGTTATTTCAAAAATCCTTAAATCTGAGATAGAAG GAGAGGGTATTCCCAATAAGGGTACTCCGCAAGGAGGAATTATTTCTCCTTTACTTTCCAACATTGTTCTAAATGAACTT GATTGGTGGATAAGTAGCCAATGGGAAACCTACAAACCTCACAGAATCTCTACTCGGCATTTAGGGTTTCGACAATATGC TAGGAAGTACACGAATCTAAAATGTGGTTATGTAGTGAGATACGCGGATGACTTCAAAATAATGTGTCGGACTTATGATG AAGCACAACGCTTTTATCATGCGACAGTTGATTTTCTCAAATCCCGCTTGGGATTAGAAATTAACCCCAAAAAGTCCAAA GTGGTTAATCTCAAGAAAAACTCGTCAGTTTTCCTTGGATTCAAAATCAAAGTGGTTAAACAAGGTAAAGCTAAATTTGG ATATATTGCAAAAACCAGTATGTCCGACAAAGCTATTACAAAAGCTAAAAGACAACTAAAAGAACGAATCAAAGGAATTC AAAAGGAGCCCACTTCAGAGAAAGTTACTCAATTTAATTCAACCCTTCTTGGTATACAAAATTACTTTAAATATGCGGTT ACAATTTACATGGATTTAACGGAGGTAAATTACTCTCTGCGAAGAGTCATAAGAACCAGACTTAGAAACAATATGAAGCA CATGAAGTTCTGTGAAACATCTGTGAATTTTAAAAGGAAGACCAAAGGAATACAACCTAACACTAAGATTTACGTTGTAC AGAACACTCCACTCTTACCAGTTACAGGAATACATCATAAAAACCCGTGGAATTTTTCGCAGGTTATCTGTAACTATACG GAAACGGGGCGTAATAAAGTACATAGTAATCTTAAGGCAATACCTAAGGATGTTCTCAACCAAGTTATGAGGACTTATTC GAAGAATAAAAGTATTGAGTACAACGATAATAGGATATCAAAATACGTTGCTCAATATGGTAAGTGTTATGTAACTGGTG AGGAAATTGGTATTGAACGTGTTCATTGTCATCACATTGTTCCCATTAAACAAGGTGGGGATGACAAGTACAACAACTTG GTAATTGTAGATTGGTTTATACACAAACTGATTCACATGACGAATCTTAATAAGATTACACATTACCTTCGGTCTTTTAA ACTTAACAAGAAACAAATGGATAAACTGAATGTGCTAAGAACTAAAGCTGGAAATGAACCGATAGTAACATAA Protein sequence : MLKKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAGVDNLTIKDIWHLNDTKII HEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQQSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSL INIGHQHYCVDIDIKGFFDNVCHKKLLRQMWTLGIRDKSLLCVISKILKSEIEGEGIPNKGTPQGGIISPLLSNIVLNEL DWWISSQWETYKPHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIMCRTYDEAQRFYHATVDFLKSRLGLEINPKKSK VVNLKKNSSVFLGFKIKVVKQGKAKFGYIAKTSMSDKAITKAKRQLKERIKGIQKEPTSEKVTQFNSTLLGIQNYFKYAV TIYMDLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGIHHKNPWNFSQVICNYT ETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVAQYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNL VIVDWFIHKLIHMTNLNKITHYLRSFKLNKKQMDKLNVLRTKAGNEPIVT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF2326 | NP_815981.1 | group II intron reverse transcriptase maturase | Not tested | Not named | Protein | 9e-115 | 46 |
