Gene Information

Name : THA_711 (THA_711)
Accession : YP_002334523.1
Strain : Thermosipho africanus TCF52B
Genome accession: NC_011653
Putative virulence/resistance : Virulence
Product : chaperone ClpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 719445 - 721811 bp
Length : 2367 bp
Strand : +
Note : -

DNA sequence :
ATGAGATATTTAGATGAAAGGATGCAAGAATTAGTCCAGCAAGCAGCAGAACGCTTATCTCAAAGAAGGCAGAACCTGTT
AAAACCCGAGCATGTACTATATGAAATTCTTCAAGATGAAAACATTCAAAAAATATTTGAAGCTTTAAATGTACCTACTG
AAGAAATCGAAGATAGGTTAGAAGAATTAATTGAAAGCCAATATGGGGTTTACTACGGTTCATCTTCTGGTGTTTATATG
TCAAATGAGCTATCTAGGATTTTTGAACTTTCAAGAAAAGAAGGTAAGTTATTAGGTTCAAGCAAAGTATCACCAGTTCA
CTTTTTGTTAGCTGTTCTTAAGGATGCTTCAACTCAATGTGCAGCTATATTATCAAAGTACAATGTAACTTATGATTCGG
TTTTAAAAGCGGTTAAAGAGCTAGCAGACTCTGGAGAAATTGATGGTGAAGGAAATGTATTAGCAAAGTATACCACTGAT
TTAACAAAGCTTGCAAAAGAAGGTAAACTTTCACCAGTTATTGGAAGGGAAAAAGAAATTGAAAGGGTAATTGAAATTCT
TTCAAGAAAAACAAAGAACAACCCAGTCCTTATTGGAGATCCAGGTGTTGGAAAAACTGCAATTGTTGAAGGCCTTGCTC
AAAGAATTGTTGAAGGTAAAGTTCCTGAGAAGCTGAAGAATAAAAAAATATTAATGCTTGATTTAGGGAAAATGCTTGCA
GGAAGCAAGTACAGAGGAGAATTTGAAGAGCGTTTAAAGAAAGTAATGGAAGAGATTAAGAAAATGAAAGATAATGTTAT
TCTTTTCATTGATGAGTTACATACCATTGTTGGAGCAGGTGCAGCAGAAGGTGCAATGGATGCATCAAATATGCTTAAAC
CAGCACTTGCAAGAGGAGAACTTCATGCCATAGGTGCAACTACACTTGAAGAATATAGAAAACACATTGAAAAAGACAAG
GCTCTTGCAAGAAGGTTCCAACCAGTACTTGTTGAAGAACCAAGTGTAGAGGAAACTATAGAGATATTAAAAGGATTGCG
CGAAACATATGAAAAACATCATGATATTAAGATAACAGACGATGCTATTGAAGCTGCTGCAAAGCTTTCAGCAAAGTATA
TCCAGGACAGATTTATGCCAGACAAGGCAATAGATTTAATAGATGAGGCAGCTGCAAAAGTAAGTTTGAAAAATAGTGAT
CCAAAATTGACTGAGTTGAAAGAAAAAATAAAATCTTTGAGTGAAAAAATAGATGAACTTACGATTAATTCACAGTATAA
AGAAGCTGCAGAGATGAAGCAGCAAATGTACAAAATGCAGCAGCAATACGAAGAACTCGAGAAAAAGTATGGTTCAAGAG
AAGTAACACCTGAAACTGTCGCAAAGGTTGTAGAATCTTGGACTGGAATTCCAGCTACAAAGATGATGGAGTCTGAAAAA
GAAAAATTATTAAAATTTGAAGAACTAGTCCATCAGAGAATGGTAGACCAAGAAGAGGCTGTAAAAGTAGTTGCTGATGC
AATAAGAAAAGCAAGAGCTGGTATAAAAGATCCAAATAGACCAATAGGAACATTCTTATTCCTAGGACCAAGTGGTGTTG
GCAAAACTGAACTTGCAAAAACAATTGCTGAATTACTCTTTGGCTCTGAAAACGCACTCATAAGGATTGATATGAGTGAA
TACATGGAGAAACACTCAGTTGCAAGACTTATAGGTGCACCTCCAGGATATGTTGGTTATGATCAAGGTGGTCAATTAAC
CGAAGCTGTTAGAAGAAAACCATATAGTGTGATACTCCTTGATGAAGTAGAAAAGGCACATCCTGAGGTATTCAATGTAC
TCTTACAAGTCTTTGATGATGGTAGACTTACTGATGGTAAAGGTAACACAGTTGATTTTAGAAATACAATAATAATCATG
ACAAGTAACCTTGCAAGTGATAAGATATTGAGAAAAGTAGAAGCTGGAGTTGATTTTGAAAAGATAGAAGAATCTGTACG
TGAAGATTTAAAACACTACTTTAGACCAGAGTTCATAAATAGAATAGACCATGTAGTGATATTCAAGCCATTGACAAAAG
AGCATATGAAAGAAATTGTAGAAAAATTAGTTGCAAGGCTTGAAAATAGATTAAAAGAAAAGAATTTAAAGATAAAACTT
ACAGAGAAAGCAAAAGAATATCTAGCAGAAAAAGGTTACGATCCAGCATTTGGTGCAAGACCACTTAGAAGGTTAATAGA
GAGAGAAATTGAAACACCACTTTCGGTAAAAATAATTGCTGGAGAAATTGCAGAAGGAGATATTGTTCTAGTTGATGAAG
AAAATGGAAAATTGATTGTAGAAAAAGAAAAAGAATTGACAAAATAG

Protein sequence :
MRYLDERMQELVQQAAERLSQRRQNLLKPEHVLYEILQDENIQKIFEALNVPTEEIEDRLEELIESQYGVYYGSSSGVYM
SNELSRIFELSRKEGKLLGSSKVSPVHFLLAVLKDASTQCAAILSKYNVTYDSVLKAVKELADSGEIDGEGNVLAKYTTD
LTKLAKEGKLSPVIGREKEIERVIEILSRKTKNNPVLIGDPGVGKTAIVEGLAQRIVEGKVPEKLKNKKILMLDLGKMLA
GSKYRGEFEERLKKVMEEIKKMKDNVILFIDELHTIVGAGAAEGAMDASNMLKPALARGELHAIGATTLEEYRKHIEKDK
ALARRFQPVLVEEPSVEETIEILKGLRETYEKHHDIKITDDAIEAAAKLSAKYIQDRFMPDKAIDLIDEAAAKVSLKNSD
PKLTELKEKIKSLSEKIDELTINSQYKEAAEMKQQMYKMQQQYEELEKKYGSREVTPETVAKVVESWTGIPATKMMESEK
EKLLKFEELVHQRMVDQEEAVKVVADAIRKARAGIKDPNRPIGTFLFLGPSGVGKTELAKTIAELLFGSENALIRIDMSE
YMEKHSVARLIGAPPGYVGYDQGGQLTEAVRRKPYSVILLDEVEKAHPEVFNVLLQVFDDGRLTDGKGNTVDFRNTIIIM
TSNLASDKILRKVEAGVDFEKIEESVREDLKHYFRPEFINRIDHVVIFKPLTKEHMKEIVEKLVARLENRLKEKNLKIKL
TEKAKEYLAEKGYDPAFGARPLRRLIEREIETPLSVKIIAGEIAEGDIVLVDEENGKLIVEKEKELTK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 1e-166 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
THA_711 YP_002334523.1 chaperone ClpB VFG0079 Protein 2e-176 54
THA_711 YP_002334523.1 chaperone ClpB VFG0080 Protein 4e-142 50